Detail Information of piRNA: piR-mmu-515487

Dataset	Accession	Reads	PubMed	Method	Tissue
11	GSM822760	1	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/+
50	GSM610965	17	21602304	small RNA	Male germ cell, Type A spermatogonia
51	GSM610966	3	21602304	small RNA	Male germ cell, Pachytene spermatocytes
52	GSM610967	1	21602304	small RNA	Male germ cell, Round spermatids
61	GSM319957	1	18922463	Miwi2 IP	16.5 dpc testis
116	GSM958037	21	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	6	22902560	Mili IP	Fkbp6 -/-,P10,testis
118	GSM958039	1	22902560	Mili IP	Tdrd1 +/-,E18,testis
133	GSM475280	1	20022248	Mili IP	adult testis
224	GSM1528806	7	26588211	small RNA	10dpp testes
346	GSM475280	1	20022248	Mili-IP	testis
441	GSM1096582	1	23523368	small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	13	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	101	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	22	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	47	23523368	oxidized small RNA	Wild Type 14.5 dpp testes

8 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	10:47275915-47275943:-		LINE L1 L1MdMus_II;
Location 2	11:45400796-45400824:-
Location 3	11:86060215-86060243:-	Brip1 ENSMUST00000044423;
Location 4	13:59709476-59709504:+	Spata31d1a ENSMUST00000224982;
Location 5	15:92691904-92691932:+	Pdzrn4 ENSMUST00000169942; Pdzrn4 ENSMUST00000035399;
Location 6	3:23406809-23406837:+
Location 7	4:12271273-12271301:+		LTR ERVL-MaLR MTB_Mm;
Location 8	6:27526862-27526890:+	Grm8 ENSMUST00000115323; Grm8 ENSMUST00000115324; Grm8 ENSMUST00000090512;	LTR ERVL-MaLR MTA_Mm;

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.

PubMed	25582079	Journal	Cell Res. 2015 Feb;25(2):193-207.
Title	MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors	Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.