Detail Information of piRNA: piR-mmu-48711

Dataset	Accession	Reads	PubMed	Method	Tissue
6	GSM113695	1	16778019	Chromatography	testes tissue from Swiss Webster male mice, 8-10 weeks old
57	GSM319953	2	18922463	Mili IP	10 dpp Dnmt3L heterozygotes testis
58	GSM319954	8	18922463	Mili IP	10 dpp Dnmt3L KO testis
59	GSM319955	5	18922463	small RNA	16.5 dpc testis
61	GSM319957	7	18922463	Miwi2 IP	16.5 dpc testis
62	GSM319958	34	18922463	small RNA	4-6 week ovary
72	GSM179088	1	17446352	Mili IP	10 dpp testis
86	N/A	1	22020280	Miwi2 IP	Miwi2DAH_2 E16.5 fetal testis
114	GSM958035	1	22902560	Mili IP	Fkbp6 +/-,P0,testis
116	GSM958037	69	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	6	22902560	Mili IP	Fkbp6 -/-,P10,testis
133	GSM475280	1	20022248	Mili IP	adult testis
228	GSM1528810	1	26588211	small RNA	Adult testes Asb1 ao36(KO)
235	GSM433289	1	26115953	small RNA	18dpp homo tdrd6 KO testes
346	GSM475280	1	20022248	Mili-IP	testis
360	GSM2500212	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
361	GSM2500213	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
362	GSM2500214	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
363	GSM2500215	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
364	GSM2500216	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
365	GSM2500217	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
444	GSM1096600	10	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	1	23523368	small RNA	Wild Type 14.5 dpp testes

2194 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	5:63015725-63015753:+
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16778019	Journal	Science. 2006 Jul 21;313(5785):363-7.
Title	Characterization of the piRNA complex from rat testes.
Authors	Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	17446352	Journal	Science. 2007 May 4;316(5825):744-7.
Title	Developmentally regulated piRNA clusters implicate MILI in transposon control.
Authors	Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	31358756	Journal	Nat Commun. 2019 Jul 29;10(1):3389. doi: 10.1038/s41467-019-11312-8.
Title	Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes.
Authors	Yang Q, Li R, Lyu Q, Hou L, Liu Z, Sun Q, Liu M, Shi H, Xu B, Yin M, Yan Z,Huang Y, Liu M, Li Y, Wu L.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.