Detail Information of piRNA: piR-mmu-458615

Dataset	Accession	Reads	PubMed	Method	Tissue
11	GSM822760	1	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/+
12	GSM822758	2	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
13	GSM822759	4	22121019	Miwi IP	Testes, C57BL/6 P20 Miwi +/+
14	GSM822761	15	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/ADH
15	GSM822762	4	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
16	GSM822763	1	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
32	GSM684625	1	22842725	Miwi CLIP	C57BL/6 adult testis
52	GSM610967	12	21602304	small RNA	Male germ cell, Round spermatids
61	GSM319957	1	18922463	Miwi2 IP	16.5 dpc testis
62	GSM319958	1	18922463	small RNA	4-6 week ovary
73	N/A	21	22020280	Mili IP	Mili_MiliDAH_1 E16.5 fetal testis
74	N/A	61	22020280	Mili IP	Mili_MiliDAH_2 E16.5 fetal testis
75	N/A	8	22020280	Mili IP	Miwi2DAH_1 E16.5 fetal testis
76	N/A	3	22020280	Mili IP	Miwi2DAH_2 E16.5 fetal testis
77	N/A	10	22020280	Mili IP	Miwi2+/-_1 E16.5 fetal testis
78	N/A	2	22020280	Mili IP	Miwi2+/-_2 E16.5 fetal testis
81	N/A	4	22020280	Mili IP	wild_type_1 E16.5 fetal testis
82	N/A	1	22020280	Mili IP	wild_type_2 E16.5 fetal testis
83	N/A	34	22020280	Miwi2 IP	MiliDAH_1 E16.5 fetal testis
84	N/A	2	22020280	Miwi2 IP	MiliDAH_2 E16.5 fetal testis
85	N/A	4	22020280	Miwi2 IP	Miwi2DAH_1 E16.5 fetal testis
86	N/A	26	22020280	Miwi2 IP	Miwi2DAH_2 E16.5 fetal testis
87	N/A	70	22020280	Miwi2 IP	wild_type_1 E16.5 fetal testis
88	N/A	10	22020280	Miwi2 IP	wild_type_2 E16.5 fetal testis
132	GSM475279	7	20022248	Miwi IP	adult testis
224	GSM1528806	1	26588211	small RNA	10dpp testes
225	GSM1528807	9	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	11	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	12	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	10	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	1	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	1	26115953	small RNA	18dpp homo tdrd6 KO testes
240	GSM433294	6	26115953	small RNA	18.5dpc hetero tdrd1 KO testes
246	GSM1318059	2	25262350	small RNA	E16.5 whole testes
345	GSM475279	7	20022248	Miwi-IP	testis
348	GSM3772906	15	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349	GSM3772907	19	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350	GSM3772908	21	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351	GSM3772909	23	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352	GSM3772910	12	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
353	GSM3772911	9	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
354	GSM4635227	3	33184219	small RNA	primordial germ cells(age: E13.5; sex: male)
355	GSM4635228	3	33184219	small RNA	primordial germ cells(age: E13.5; sex: male)
356	GSM4635229	5	33184219	small RNA	primordial germ cells(age: E13.5; sex: male)
357	GSM4635230	3	33184219	small RNA	primordial germ cells(age: E13.5; sex: male; treat: ionizing radiation)
358	GSM4635231	3	33184219	small RNA	primordial germ cells(age: E13.5; sex: male; treat: ionizing radiation)
359	GSM4635232	2	33184219	small RNA	primordial germ cells(age: E13.5; sex: male; treat: ionizing radiation)
441	GSM1096582	2	23523368	small RNA	Wild Type 10.5 dpp testes
442	GSM1096599	131	23523368	oxidized small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	237	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	252	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	70	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	208	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	1	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	5	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	13	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	14	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	16	23523368	small RNA	Wild Type 6 weeks dpp testes
452	GSM1096604	11	23523368	oxidized small RNA	Wild Type 6 weeks dpp testes

137 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	5:58469852-58469882:+		LINE L1 L1MdF_V;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	22842725	Journal	Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title	Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors	Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	25262350	Journal	Nucleic Acids Res. 2014 Oct 29;42(19):11903-11
Title	HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse.
Authors	Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H.

PubMed	32674113	Journal	Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title	SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors	Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.

PubMed	33184219	Journal	Genes Dev. 2020 Dec 1;34(23-24):1637-1649. doi: 10.1101/gad.341602.120. Epub 2020 Nov 12.
Title	Sexually dimorphic DNA damage responses and mutation avoidance in the mouse germline.
Authors	Bloom JC, Schimenti JC.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.