Detail Information of piRNA: piR-mmu-4237

Dataset	Accession	Reads	PubMed	Method	Tissue
4	N/A	N/A	16751776	small RNA	testis
16	GSM822763	1	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
57	GSM319953	3	18922463	Mili IP	10 dpp Dnmt3L heterozygotes testis
60	GSM319956	1	18922463	Mili IP	16.5 dpc testis
71	GSM509280	3	20439430	small RNA	MitoPLD-/- 10 dpp testis
83	N/A	1	22020280	Miwi2 IP	MiliDAH_1 E16.5 fetal testis
84	N/A	2	22020280	Miwi2 IP	MiliDAH_2 E16.5 fetal testis
85	N/A	2	22020280	Miwi2 IP	Miwi2DAH_1 E16.5 fetal testis
86	N/A	2	22020280	Miwi2 IP	Miwi2DAH_2 E16.5 fetal testis
87	N/A	7	22020280	Miwi2 IP	wild_type_1 E16.5 fetal testis
116	GSM958037	13	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	1	22902560	Mili IP	Fkbp6 -/-,P10,testis
120	GSM958041	2	22902560	Miwi2 IP	Tdrd1 +/-,E18,testis
348	GSM3772906	4	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349	GSM3772907	13	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350	GSM3772908	7	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351	GSM3772909	17	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352	GSM3772910	12	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
353	GSM3772911	5	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
443	GSM1096583	5	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	7	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	2	23523368	small RNA	Wild Type 14.5 dpp testes
449	GSM1096586	1	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	1	23523368	oxidized small RNA	Wild Type 20.5 dpp testes

1029 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	X:99902822-99902850:+		LINE L1 L1MdTf_I;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16751776	Journal	Nature. 2006 Jul 13;442(7099):199-202.
Title	A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors	Girard A, Sachidanandam R, Hannon GJ, Carmell MA.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	20439430	Journal	Genes Dev. 2010 May;24(9):887-92.
Title	MVH in piRNA processing and gene silencing of retrotransposons.
Authors	Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	32674113	Journal	Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title	SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors	Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.