Detail Information of piRNA: piR-mmu-39659

Dataset	Accession	Reads	PubMed	Method	Tissue
6	GSM113695	1	16778019	Chromatography	testes tissue from Swiss Webster male mice, 8-10 weeks old
11	GSM822760	3	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/+
12	GSM822758	14	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
13	GSM822759	2	22121019	Miwi IP	Testes, C57BL/6 P20 Miwi +/+
14	GSM822761	53	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/ADH
15	GSM822762	2	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
17	GSM822764	7	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
32	GSM684625	4	22842725	Miwi CLIP	C57BL/6 adult testis
50	GSM610965	267	21602304	small RNA	Male germ cell, Type A spermatogonia
51	GSM610966	1445	21602304	small RNA	Male germ cell, Pachytene spermatocytes
52	GSM610967	117	21602304	small RNA	Male germ cell, Round spermatids
57	GSM319953	84	18922463	Mili IP	10 dpp Dnmt3L heterozygotes testis
58	GSM319954	81	18922463	Mili IP	10 dpp Dnmt3L KO testis
59	GSM319955	6	18922463	small RNA	16.5 dpc testis
61	GSM319957	19	18922463	Miwi2 IP	16.5 dpc testis
62	GSM319958	2	18922463	small RNA	4-6 week ovary
66	GSM509275	23	20439430	small RNA	MitoPLD+/+ E16.5 testis
67	GSM509276	2	20439430	small RNA	MitoPLD-/- E16.5 testis
68	GSM509277	9	20439430	small RNA	Mili-/- E16.5 testis
69	GSM509278	14	20439430	small RNA	Miwi2-/- E16.5 testis
70	GSM509279	7	20439430	small RNA	MVH-/- E16.5 testis
71	GSM509280	5	20439430	small RNA	MitoPLD-/- 10 dpp testis
72	GSM179088	3	17446352	Mili IP	10 dpp testis
73	N/A	2	22020280	Mili IP	Mili_MiliDAH_1 E16.5 fetal testis
74	N/A	2	22020280	Mili IP	Mili_MiliDAH_2 E16.5 fetal testis
75	N/A	33	22020280	Mili IP	Miwi2DAH_1 E16.5 fetal testis
76	N/A	90	22020280	Mili IP	Miwi2DAH_2 E16.5 fetal testis
77	N/A	17	22020280	Mili IP	Miwi2+/-_1 E16.5 fetal testis
78	N/A	18	22020280	Mili IP	Miwi2+/-_2 E16.5 fetal testis
79	N/A	2	22020280	Mili IP	Miwi2-/-_1 E16.5 fetal testis
80	N/A	12	22020280	Mili IP	Miwi2-/-_2 E16.5 fetal testis
81	N/A	61	22020280	Mili IP	wild_type_1 E16.5 fetal testis
82	N/A	44	22020280	Mili IP	wild_type_2 E16.5 fetal testis
83	N/A	6	22020280	Miwi2 IP	MiliDAH_1 E16.5 fetal testis
84	N/A	2	22020280	Miwi2 IP	MiliDAH_2 E16.5 fetal testis
85	N/A	132	22020280	Miwi2 IP	Miwi2DAH_1 E16.5 fetal testis
86	N/A	78	22020280	Miwi2 IP	Miwi2DAH_2 E16.5 fetal testis
87	N/A	26	22020280	Miwi2 IP	wild_type_1 E16.5 fetal testis
88	N/A	119	22020280	Miwi2 IP	wild_type_2 E16.5 fetal testis
114	GSM958035	4	22902560	Mili IP	Fkbp6 +/-,P0,testis
115	GSM958036	17	22902560	Mili IP	Fkbp6 -/-,P0,testis
116	GSM958037	85	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	377	22902560	Mili IP	Fkbp6 -/-,P10,testis
118	GSM958039	10	22902560	Mili IP	Tdrd1 +/-,E18,testis
119	GSM958040	4	22902560	Mili IP	Tdrd1 -/-,E18,testis
120	GSM958041	166	22902560	Miwi2 IP	Tdrd1 +/-,E18,testis
132	GSM475279	33	20022248	Miwi IP	adult testis
133	GSM475280	410	20022248	Mili IP	adult testis
224	GSM1528806	49	26588211	small RNA	10dpp testes
225	GSM1528807	127	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	132	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	150	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	100	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	87	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	66	26115953	small RNA	18dpp homo tdrd6 KO testes
236	GSM433290	96	26115953	small RNA	25dpp hetero tdrd6 KO testes
237	GSM433291	19	26115953	small RNA	25dpp homo tdrd6 KO testes
240	GSM433294	3	26115953	small RNA	18.5dpc hetero tdrd1 KO testes
246	GSM1318059	14	25262350	small RNA	E16.5 whole testes
247	GSM1318060	8	25262350	small RNA	E16.5 whole testes Hsp90-alpha KO
345	GSM475279	33	20022248	Miwi-IP	testis
346	GSM475280	410	20022248	Mili-IP	testis
347	GSM475281	35	20022248	small RNA	testis
348	GSM3772906	135	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349	GSM3772907	87	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350	GSM3772908	148	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351	GSM3772909	131	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352	GSM3772910	150	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
353	GSM3772911	141	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
363	GSM2500215	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
364	GSM2500216	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
365	GSM2500217	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
441	GSM1096582	96	23523368	small RNA	Wild Type 10.5 dpp testes
442	GSM1096599	965	23523368	oxidized small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	726	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	1273	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	978	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	1942	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	74	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	374	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	294	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	547	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	157	23523368	small RNA	Wild Type 6 weeks dpp testes
452	GSM1096604	268	23523368	oxidized small RNA	Wild Type 6 weeks dpp testes

2721 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	4:93581262-93581289:+	Gm12649 ENSMUST00000137509;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16778019	Journal	Science. 2006 Jul 21;313(5785):363-7.
Title	Characterization of the piRNA complex from rat testes.
Authors	Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	22842725	Journal	Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title	Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors	Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	20439430	Journal	Genes Dev. 2010 May;24(9):887-92.
Title	MVH in piRNA processing and gene silencing of retrotransposons.
Authors	Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.

PubMed	17446352	Journal	Science. 2007 May 4;316(5825):744-7.
Title	Developmentally regulated piRNA clusters implicate MILI in transposon control.
Authors	Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	25262350	Journal	Nucleic Acids Res. 2014 Oct 29;42(19):11903-11
Title	HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse.
Authors	Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H.

PubMed	32674113	Journal	Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title	SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors	Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.

PubMed	31358756	Journal	Nat Commun. 2019 Jul 29;10(1):3389. doi: 10.1038/s41467-019-11312-8.
Title	Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes.
Authors	Yang Q, Li R, Lyu Q, Hou L, Liu Z, Sun Q, Liu M, Shi H, Xu B, Yin M, Yan Z,Huang Y, Liu M, Li Y, Wu L.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.