Loading...
piRBase Id | piR-mmu-390225 | Accession | N/A |
---|---|---|---|
Organism | Mouse | Number of methods | 3 |
Sequence | GAGACTATGAAAGCCAGAAGAGCCTGGAC | Number of papers | 11 |
Length | 29 | Golden piRNA | Y |
Aliases | N/A |
Dataset | Accession | Reads | PubMed | Method | Tissue |
---|---|---|---|---|---|
11 | GSM822760 | 1 | 22121019 | Miwi IP | Testes, C57BL/6 Adult Miwi +/+ |
12 | GSM822758 | 5 | 22121019 | Miwi IP | Testes, C57BL/6 P14 Miwi +/+ |
15 | GSM822762 | 1 | 22121019 | Miwi IP | Testes, C57BL/6 Adult Miwi -/ADH |
16 | GSM822763 | 1 | 22121019 | Miwi IP | Testes, C57BL/6 Adult Miwi -/ADH |
50 | GSM610965 | 11 | 21602304 | small RNA | Male germ cell, Type A spermatogonia |
51 | GSM610966 | 10 | 21602304 | small RNA | Male germ cell, Pachytene spermatocytes |
52 | GSM610967 | 2 | 21602304 | small RNA | Male germ cell, Round spermatids |
58 | GSM319954 | 1 | 18922463 | Mili IP | 10 dpp Dnmt3L KO testis |
59 | GSM319955 | 13 | 18922463 | small RNA | 16.5 dpc testis |
60 | GSM319956 | 5 | 18922463 | Mili IP | 16.5 dpc testis |
61 | GSM319957 | 24 | 18922463 | Miwi2 IP | 16.5 dpc testis |
73 | N/A | 6 | 22020280 | Mili IP | Mili_MiliDAH_1 E16.5 fetal testis |
74 | N/A | 131 | 22020280 | Mili IP | Mili_MiliDAH_2 E16.5 fetal testis |
75 | N/A | 1324 | 22020280 | Mili IP | Miwi2DAH_1 E16.5 fetal testis |
76 | N/A | 15 | 22020280 | Mili IP | Miwi2DAH_2 E16.5 fetal testis |
77 | N/A | 121 | 22020280 | Mili IP | Miwi2+/-_1 E16.5 fetal testis |
78 | N/A | 56 | 22020280 | Mili IP | Miwi2+/-_2 E16.5 fetal testis |
79 | N/A | 2 | 22020280 | Mili IP | Miwi2-/-_1 E16.5 fetal testis |
81 | N/A | 69 | 22020280 | Mili IP | wild_type_1 E16.5 fetal testis |
82 | N/A | 35 | 22020280 | Mili IP | wild_type_2 E16.5 fetal testis |
83 | N/A | 22 | 22020280 | Miwi2 IP | MiliDAH_1 E16.5 fetal testis |
84 | N/A | 123 | 22020280 | Miwi2 IP | MiliDAH_2 E16.5 fetal testis |
85 | N/A | 23 | 22020280 | Miwi2 IP | Miwi2DAH_1 E16.5 fetal testis |
86 | N/A | 635 | 22020280 | Miwi2 IP | Miwi2DAH_2 E16.5 fetal testis |
87 | N/A | 456 | 22020280 | Miwi2 IP | wild_type_1 E16.5 fetal testis |
88 | N/A | 31 | 22020280 | Miwi2 IP | wild_type_2 E16.5 fetal testis |
114 | GSM958035 | 51 | 22902560 | Mili IP | Fkbp6 +/-,P0,testis |
115 | GSM958036 | 31 | 22902560 | Mili IP | Fkbp6 -/-,P0,testis |
116 | GSM958037 | 47 | 22902560 | Mili IP | Fkbp6 +/-,P10,testis |
117 | GSM958038 | 306 | 22902560 | Mili IP | Fkbp6 -/-,P10,testis |
119 | GSM958040 | 72 | 22902560 | Mili IP | Tdrd1 -/-,E18,testis |
120 | GSM958041 | 449 | 22902560 | Miwi2 IP | Tdrd1 +/-,E18,testis |
227 | GSM1528809 | 1 | 26588211 | small RNA | Adult testes Asb1 ao34(Het) |
235 | GSM433289 | 1 | 26115953 | small RNA | 18dpp homo tdrd6 KO testes |
240 | GSM433294 | 10 | 26115953 | small RNA | 18.5dpc hetero tdrd1 KO testes |
246 | GSM1318059 | 7 | 25262350 | small RNA | E16.5 whole testes |
247 | GSM1318060 | 2 | 25262350 | small RNA | E16.5 whole testes Hsp90-alpha KO |
348 | GSM3772906 | 63 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control) |
349 | GSM3772907 | 47 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control) |
350 | GSM3772908 | 103 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control) |
351 | GSM3772909 | 89 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-) |
352 | GSM3772910 | 97 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-) |
353 | GSM3772911 | 74 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-) |
359 | GSM4635232 | 1 | 33184219 | small RNA | primordial germ cells(age: E13.5; sex: male; treat: ionizing radiation) |
442 | GSM1096599 | 100 | 23523368 | oxidized small RNA | Wild Type 10.5 dpp testes |
443 | GSM1096583 | 5 | 23523368 | small RNA | Wild Type 12.5 dpp testes |
444 | GSM1096600 | 33 | 23523368 | oxidized small RNA | Wild Type 12.5 dpp testes |
445 | GSM1096584 | 14 | 23523368 | small RNA | Wild Type 14.5 dpp testes |
446 | GSM1096601 | 223 | 23523368 | oxidized small RNA | Wild Type 14.5 dpp testes |
No. | Location | Gene | RepeatMaker |
---|---|---|---|
Location 1 | X:147912413-147912442:+ | SINE B4 B4A; | |
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC |
Sample | CPM |
---|---|
GSM179088 | 0 |
GSM261957 | 0 |
GSM261958 | 0 |
GSM261959 | 0 |
GSM319953 | 0 |
GSM319954 | 0.4649 |
GSM319955 | 7.8886 |
GSM319956 | 10.6009 |
GSM319957 | 12.3691 |
GSM319958 | 0 |
GSM319959 | 0 |
GSM319960 | 0 |
GSM319961 | 0 |
GSM400967 | 0 |
Sample | CPM |
---|---|
GSM400968 | 0 |
GSM400969 | 0 |
GSM433288 | 0 |
GSM433289 | 0.2187 |
GSM433290 | 0 |
GSM433291 | 0 |
GSM433292 | 0 |
GSM433293 | 0 |
GSM433294 | 2.3465 |
GSM433295 | 0.4757 |
GSM475279 | 0 |
GSM475280 | 0 |
GSM475281 | 0 |
GSM678422 | 0 |
No record. |
No record. |
No record. |
No record. |
PubMed | 22121019 | Journal | Nature. 2011 Nov 27;480(7376):264-7. |
---|---|---|---|
Title | Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing. | ||
Authors | Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS. |
PubMed | 21602304 | Journal | RNA. 2011 Jul;17(7):1191-203. |
---|---|---|---|
Title | piRNA profiling during specific stages of mouse spermatogenesis. | ||
Authors | Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C. |
PubMed | 18922463 | Journal | Mol Cell. 2008 Sep 26;31(6):785-99. |
---|---|---|---|
Title | A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. | ||
Authors | Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ. |
PubMed | 22020280 | Journal | Nature. 2011 Oct 23;480(7376):259-63. |
---|---|---|---|
Title | The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements. | ||
Authors | De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D. |
PubMed | 22902560 | Journal | Mol Cell. 2012 Sep 28;47(6):970-9. |
---|---|---|---|
Title | A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing. | ||
Authors | Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS. |
PubMed | 26588211 | Journal | PLoS Genet. 2015 Nov 20;11(11):e1005652 |
---|---|---|---|
Title | Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals | ||
Authors | Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC. |
PubMed | 26115953 | Journal | Genes Dev. 2015 Jul 1; 29(13): 1403?415 |
---|---|---|---|
Title | RNF17 blocks promiscuous activity of PIWI proteins in mouse testes | ||
Authors | Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ |
PubMed | 25262350 | Journal | Nucleic Acids Res. 2014 Oct 29;42(19):11903-11 |
---|---|---|---|
Title | HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse. | ||
Authors | Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H. |
PubMed | 32674113 | Journal | Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5. |
---|---|---|---|
Title | SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation. | ||
Authors | Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D. |
PubMed | 33184219 | Journal | Genes Dev. 2020 Dec 1;34(23-24):1637-1649. doi: 10.1101/gad.341602.120. Epub 2020 Nov 12. |
---|---|---|---|
Title | Sexually dimorphic DNA damage responses and mutation avoidance in the mouse germline. | ||
Authors | Bloom JC, Schimenti JC. |
PubMed | 23523368 | Journal | Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016. |
---|---|---|---|
Title | An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes | ||
Authors | Li XZ, Roy CK, Dong X, Bolcun-Filas E et al. |