Loading...

Detail Information of piRNA: piR-mmu-367

General Information
piRBase Id piR-mmu-367 Accession DQ550094
Organism Mouse Number of methods 4
Sequence TGCCATGGGTGTACTGGAATGACAGCTG Number of papers 10
Length 28 Golden piRNA -
Aliases piR-18206; PIR11205;
Datasets
Dataset Accession Reads PubMed Method Tissue
4 N/A N/A 16751776 small RNA testis
11 GSM822760 3 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/+
12 GSM822758 20 22121019 Miwi IP Testes, C57BL/6 P14 Miwi +/+
13 GSM822759 1 22121019 Miwi IP Testes, C57BL/6 P20 Miwi +/+
14 GSM822761 3 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/ADH
35 GSM684620 47 22842725 Mili CLIP C57BL/6 adult testis
36 GSM684621 126 22842725 Mili CLIP C57BL/6 adult testis
37 GSM684622 181 22842725 Mili CLIP C57BL/6 adult testis
38 GSM684623 19 22842725 Mili CLIP C57BL/6 adult testis
50 GSM610965 2 21602304 small RNA Male germ cell, Type A spermatogonia
51 GSM610966 172 21602304 small RNA Male germ cell, Pachytene spermatocytes
52 GSM610967 179 21602304 small RNA Male germ cell, Round spermatids
121 GSM545783 17 20534472 Mov10L1 IP wild type adult testis
126 GSM466728 3 20059948 Mili IP Tdrd9+/- 14dpp testis
129 GSM466729 7 20059948 Mili IP Tdrd9+/- 14dpp testis
217 GSM1653802 5 25582079 MIWI CLIP round spermatids
225 GSM1528807 54 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 104 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 75 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 108 26588211 small RNA Adult testes Asb1 ao36(KO)
234 GSM433288 11 26115953 small RNA 18dpp hetero tdrd6 KO testes
235 GSM433289 20 26115953 small RNA 18dpp homo tdrd6 KO testes
236 GSM433290 21 26115953 small RNA 25dpp hetero tdrd6 KO testes
237 GSM433291 1 26115953 small RNA 25dpp homo tdrd6 KO testes
441 GSM1096582 12 23523368 small RNA Wild Type 10.5 dpp testes
443 GSM1096583 177 23523368 small RNA Wild Type 12.5 dpp testes
444 GSM1096600 18 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 153 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 204 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 22 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 10 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 41 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 12 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 30 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 6 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 17:66207803-66207831:+
piRNA Expression
Sample CPM
GSM179088 0
GSM261957 0
GSM261958 0
GSM261959 0
GSM319953 0
GSM319954 0
GSM319955 0
GSM319956 0
GSM319957 0
GSM319958 0
GSM319959 0
GSM319960 0
GSM319961 0
GSM400967 6.8347
Sample CPM
GSM400968 1.5631
GSM400969 0.3344
GSM433288 2.5761
GSM433289 4.3748
GSM433290 4.4598
GSM433291 0.3557
GSM433292 2.9175
GSM433293 2.1269
GSM433294 0
GSM433295 0
GSM475279 0
GSM475280 0
GSM475281 0
GSM678422 0
The Expression of piRNA: piR-mmu-367
Loading...

P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751776 Journal Nature. 2006 Jul 13;442(7099):199-202.
Title A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
PubMed 22121019 Journal Nature. 2011 Nov 27;480(7376):264-7.
Title Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.
PubMed 22842725 Journal Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.
PubMed 21602304 Journal RNA. 2011 Jul;17(7):1191-203.
Title piRNA profiling during specific stages of mouse spermatogenesis.
Authors Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.
PubMed 20534472 Journal Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11841-6.
Title Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway.
Authors Zheng K, Xiol J, Reuter M, Eckardt S, Leu NA, McLaughlin KJ, Stark A, Sachidanandam R, Pillai RS, Wang PJ.
PubMed 20059948 Journal Dev Cell. 2009 Dec;17(6):775-87.
Title The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.
Authors Shoji M, Tanaka T, Hosokawa M, Reuter M, Stark A, Kato Y, Kondoh G, Okawa K, Chujo T, Suzuki T, Hata K, Martin SL, Noce T, Kuramochi-Miyagawa S, Nakano T, Sasaki H, Pillai RS, Nakatsuji N, Chuma S.
PubMed 25582079 Journal Cell Res. 2015 Feb;25(2):193-207.
Title MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 26115953 Journal Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.