Detail Information of piRNA: piR-mmu-36486

Dataset	Accession	Reads	PubMed	Method	Tissue
6	GSM113695	1	16778019	Chromatography	testes tissue from Swiss Webster male mice, 8-10 weeks old
12	GSM822758	1	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
51	GSM610966	1	21602304	small RNA	Male germ cell, Pachytene spermatocytes
52	GSM610967	7	21602304	small RNA	Male germ cell, Round spermatids
58	GSM319954	11	18922463	Mili IP	10 dpp Dnmt3L KO testis
59	GSM319955	9	18922463	small RNA	16.5 dpc testis
61	GSM319957	2	18922463	Miwi2 IP	16.5 dpc testis
79	N/A	1	22020280	Mili IP	Miwi2-/-_1 E16.5 fetal testis
85	N/A	1	22020280	Miwi2 IP	Miwi2DAH_1 E16.5 fetal testis
88	N/A	1	22020280	Miwi2 IP	wild_type_2 E16.5 fetal testis
225	GSM1528807	26	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	49	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	90	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	78	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	76	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	102	26115953	small RNA	18dpp homo tdrd6 KO testes
236	GSM433290	75	26115953	small RNA	25dpp hetero tdrd6 KO testes
237	GSM433291	31	26115953	small RNA	25dpp homo tdrd6 KO testes
240	GSM433294	11	26115953	small RNA	18.5dpc hetero tdrd1 KO testes
247	GSM1318060	2	25262350	small RNA	E16.5 whole testes Hsp90-alpha KO
348	GSM3772906	11	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349	GSM3772907	8	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350	GSM3772908	9	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351	GSM3772909	9	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352	GSM3772910	13	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
353	GSM3772911	12	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
364	GSM2500216	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
441	GSM1096582	2	23523368	small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	21	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	10	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	29	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	73	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	11	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	1	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	28	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	1	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	25	23523368	small RNA	Wild Type 6 weeks dpp testes

2256 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	12:103793659-103793689:-	Serpina1b ENSMUST00000164454; Gm17043 ENSMUST00000164621;	Simple_repeat Simple_repeat (AC)n;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16778019	Journal	Science. 2006 Jul 21;313(5785):363-7.
Title	Characterization of the piRNA complex from rat testes.
Authors	Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	25262350	Journal	Nucleic Acids Res. 2014 Oct 29;42(19):11903-11
Title	HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse.
Authors	Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H.

PubMed	32674113	Journal	Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title	SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors	Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.

PubMed	31358756	Journal	Nat Commun. 2019 Jul 29;10(1):3389. doi: 10.1038/s41467-019-11312-8.
Title	Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes.
Authors	Yang Q, Li R, Lyu Q, Hou L, Liu Z, Sun Q, Liu M, Shi H, Xu B, Yin M, Yan Z,Huang Y, Liu M, Li Y, Wu L.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.