Detail Information of piRNA: piR-mmu-35938

Dataset	Accession	Reads	PubMed	Method	Tissue
6	GSM113695	1	16778019	Chromatography	testes tissue from Swiss Webster male mice, 8-10 weeks old
50	GSM610965	9	21602304	small RNA	Male germ cell, Type A spermatogonia
51	GSM610966	2	21602304	small RNA	Male germ cell, Pachytene spermatocytes
52	GSM610967	1	21602304	small RNA	Male germ cell, Round spermatids
57	GSM319953	2	18922463	Mili IP	10 dpp Dnmt3L heterozygotes testis
58	GSM319954	2	18922463	Mili IP	10 dpp Dnmt3L KO testis
60	GSM319956	1	18922463	Mili IP	16.5 dpc testis
61	GSM319957	3	18922463	Miwi2 IP	16.5 dpc testis
62	GSM319958	3	18922463	small RNA	4-6 week ovary
86	N/A	1	22020280	Miwi2 IP	Miwi2DAH_2 E16.5 fetal testis
116	GSM958037	4	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	5	22902560	Mili IP	Fkbp6 -/-,P10,testis
132	GSM475279	13	20022248	Miwi IP	adult testis
133	GSM475280	2	20022248	Mili IP	adult testis
225	GSM1528807	3	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	4	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	6	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	6	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	2	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	4	26115953	small RNA	18dpp homo tdrd6 KO testes
236	GSM433290	4	26115953	small RNA	25dpp hetero tdrd6 KO testes
240	GSM433294	2	26115953	small RNA	18.5dpc hetero tdrd1 KO testes
246	GSM1318059	5	25262350	small RNA	E16.5 whole testes
345	GSM475279	13	20022248	Miwi-IP	testis
346	GSM475280	2	20022248	Mili-IP	testis
347	GSM475281	1	20022248	small RNA	testis
360	GSM2500212	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
361	GSM2500213	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
362	GSM2500214	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
363	GSM2500215	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
364	GSM2500216	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
365	GSM2500217	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
441	GSM1096582	4	23523368	small RNA	Wild Type 10.5 dpp testes
442	GSM1096599	80	23523368	oxidized small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	29	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	125	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	72	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	191	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	3	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	2	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	3	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	7	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	4	23523368	small RNA	Wild Type 6 weeks dpp testes
452	GSM1096604	2	23523368	oxidized small RNA	Wild Type 6 weeks dpp testes

6938 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	2:132615037-132615065:+	AU019990 ENSMUST00000153028; AU019990 ENSMUST00000143964;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16778019	Journal	Science. 2006 Jul 21;313(5785):363-7.
Title	Characterization of the piRNA complex from rat testes.
Authors	Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	25262350	Journal	Nucleic Acids Res. 2014 Oct 29;42(19):11903-11
Title	HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse.
Authors	Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H.

PubMed	31358756	Journal	Nat Commun. 2019 Jul 29;10(1):3389. doi: 10.1038/s41467-019-11312-8.
Title	Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes.
Authors	Yang Q, Li R, Lyu Q, Hou L, Liu Z, Sun Q, Liu M, Shi H, Xu B, Yin M, Yan Z,Huang Y, Liu M, Li Y, Wu L.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.