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Detail Information of piRNA: piR-mmu-35509

General Information
piRBase Id piR-mmu-35509 Accession DQ705026
Organism Mouse Number of methods 4
Sequence CTGAAATGAAGAGAATACTCTTGCTGATC Number of papers 12
Length 29 Golden piRNA Y
Aliases piR-120348; PIR213674;
Datasets
Dataset Accession Reads PubMed Method Tissue
6 GSM113695 2 16778019 Chromatography testes tissue from Swiss Webster male mice, 8-10 weeks old
50 GSM610965 2 21602304 small RNA Male germ cell, Type A spermatogonia
51 GSM610966 8 21602304 small RNA Male germ cell, Pachytene spermatocytes
52 GSM610967 51 21602304 small RNA Male germ cell, Round spermatids
57 GSM319953 1 18922463 Mili IP 10 dpp Dnmt3L heterozygotes testis
59 GSM319955 2511 18922463 small RNA 16.5 dpc testis
60 GSM319956 1 18922463 Mili IP 16.5 dpc testis
61 GSM319957 37 18922463 Miwi2 IP 16.5 dpc testis
62 GSM319958 3841 18922463 small RNA 4-6 week ovary
72 GSM179088 1 17446352 Mili IP 10 dpp testis
73 N/A 3 22020280 Mili IP Mili_MiliDAH_1 E16.5 fetal testis
74 N/A 4 22020280 Mili IP Mili_MiliDAH_2 E16.5 fetal testis
75 N/A 1 22020280 Mili IP Miwi2DAH_1 E16.5 fetal testis
76 N/A 1 22020280 Mili IP Miwi2DAH_2 E16.5 fetal testis
77 N/A 2 22020280 Mili IP Miwi2+/-_1 E16.5 fetal testis
78 N/A 5 22020280 Mili IP Miwi2+/-_2 E16.5 fetal testis
79 N/A 6 22020280 Mili IP Miwi2-/-_1 E16.5 fetal testis
80 N/A 84 22020280 Mili IP Miwi2-/-_2 E16.5 fetal testis
81 N/A 1 22020280 Mili IP wild_type_1 E16.5 fetal testis
82 N/A 5 22020280 Mili IP wild_type_2 E16.5 fetal testis
83 N/A 2 22020280 Miwi2 IP MiliDAH_1 E16.5 fetal testis
84 N/A 1 22020280 Miwi2 IP MiliDAH_2 E16.5 fetal testis
85 N/A 9 22020280 Miwi2 IP Miwi2DAH_1 E16.5 fetal testis
86 N/A 2 22020280 Miwi2 IP Miwi2DAH_2 E16.5 fetal testis
87 N/A 1 22020280 Miwi2 IP wild_type_1 E16.5 fetal testis
88 N/A 4 22020280 Miwi2 IP wild_type_2 E16.5 fetal testis
122 N/A 6257 21515829 small RNA hippocampus
132 GSM475279 178 20022248 Miwi IP adult testis
133 GSM475280 57 20022248 Mili IP adult testis
224 GSM1528806 61 26588211 small RNA 10dpp testes
225 GSM1528807 1554 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 1823 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 1780 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 1957 26588211 small RNA Adult testes Asb1 ao36(KO)
234 GSM433288 1448 26115953 small RNA 18dpp hetero tdrd6 KO testes
235 GSM433289 1227 26115953 small RNA 18dpp homo tdrd6 KO testes
236 GSM433290 899 26115953 small RNA 25dpp hetero tdrd6 KO testes
237 GSM433291 683 26115953 small RNA 25dpp homo tdrd6 KO testes
238 GSM433292 573 26115953 small RNA 6 weeks hetero tdrd6 KO testes
240 GSM433294 1783 26115953 small RNA 18.5dpc hetero tdrd1 KO testes
246 GSM1318059 465 25262350 small RNA E16.5 whole testes
247 GSM1318060 392 25262350 small RNA E16.5 whole testes Hsp90-alpha KO
345 GSM475279 178 20022248 Miwi-IP testis 
346 GSM475280 57 20022248 Mili-IP testis 
347 GSM475281 580 20022248 small RNA testis 
348 GSM3772906 873 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349 GSM3772907 2289 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350 GSM3772908 3114 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351 GSM3772909 3607 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352 GSM3772910 3246 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
353 GSM3772911 2261 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
441 GSM1096582 4256 23523368 small RNA Wild Type 10.5 dpp testes
442 GSM1096599 1755 23523368 oxidized small RNA Wild Type 10.5 dpp testes
443 GSM1096583 28994 23523368 small RNA Wild Type 12.5 dpp testes
444 GSM1096600 759 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 47960 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 2874 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 1414 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 45 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 1917 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 17 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 1477 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 23 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 16:23108988-23109017:+ Eif4a2 ENSMUST00000023599; Eif4a2 ENSMUST00000168891; Eif4a2 ENSMUST00000147117; Eif4a2 ENSMUST00000187168; Eif4a2 ENSMUST00000134816; Eif4a2 ENSMUST00000077605; Eif4a2 ENSMUST00000232287; Eif4a2 ENSMUST00000130775; Eif4a2 ENSMUST00000141392; Eif4a2 ENSMUST00000140017; Eif4a2 ENSMUST00000130113; Eif4a2 ENSMUST00000152129; Eif4a2 ENSMUST00000123413; Eif4a2 ENSMUST00000149328; Eif4a2 ENSMUST00000131871; Eif4a2 ENSMUST00000130483; Eif4a2 ENSMUST00000142031; Eif4a2 ENSMUST00000135020; Snord2 ENSMUST00000157899; Simple_repeat Simple_repeat (TGCTG)n;
piRNA Expression
Sample CPM
GSM179088 5.5319
GSM261957 0
GSM261958 914.1407
GSM261959 51.3156
GSM319953 0.7538
GSM319954 0
GSM319955 1523.7039
GSM319956 2.1202
GSM319957 19.0691
GSM319958 6189.1917
GSM319959 0
GSM319960 0
GSM319961 0
GSM400967 0
Sample CPM
GSM400968 0
GSM400969 0
GSM433288 339.1059
GSM433289 268.3952
GSM433290 190.924
GSM433291 242.9617
GSM433292 139.3125
GSM433293 171.0032
GSM433294 418.3816
GSM433295 591.024
GSM475279 17.0973
GSM475280 5.1825
GSM475281 54.4114
GSM678422 111.2655
The Expression of piRNA: piR-mmu-35509
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16778019 Journal Science. 2006 Jul 21;313(5785):363-7.
Title Characterization of the piRNA complex from rat testes.
Authors Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.
PubMed 21602304 Journal RNA. 2011 Jul;17(7):1191-203.
Title piRNA profiling during specific stages of mouse spermatogenesis.
Authors Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.
PubMed 18922463 Journal Mol Cell. 2008 Sep 26;31(6):785-99.
Title A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.
PubMed 17446352 Journal Science. 2007 May 4;316(5825):744-7.
Title Developmentally regulated piRNA clusters implicate MILI in transposon control.
Authors Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ.
PubMed 22020280 Journal Nature. 2011 Oct 23;480(7376):259-63.
Title The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.
PubMed 21515829 Journal RNA. 2011 Jun;17(6):1090-9.
Title Identification of piRNAs in the central nervous system.
Authors Lee EJ, Banerjee S, Zhou H, Jammalamadaka A, Arcila M, Manjunath BS, Kosik KS.
PubMed 20022248 Journal Curr Biol. 2009 Dec 29;19(24):2066-76.
Title A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 26115953 Journal Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ
PubMed 25262350 Journal Nucleic Acids Res. 2014 Oct 29;42(19):11903-11
Title HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse.
Authors Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H.
PubMed 32674113 Journal Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.