Detail Information of piRNA: piR-mmu-31989

Dataset	Accession	Reads	PubMed	Method	Tissue
6	GSM113695	1	16778019	Chromatography	testes tissue from Swiss Webster male mice, 8-10 weeks old
66	GSM509275	2	20439430	small RNA	MitoPLD+/+ E16.5 testis
69	GSM509278	1	20439430	small RNA	Miwi2-/- E16.5 testis
88	N/A	2	22020280	Miwi2 IP	wild_type_2 E16.5 fetal testis
116	GSM958037	1	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	86	22902560	Mili IP	Fkbp6 -/-,P10,testis
224	GSM1528806	22	26588211	small RNA	10dpp testes
225	GSM1528807	1	26588211	small RNA	Adult testes Asb1 ao31(Het)
240	GSM433294	1	26115953	small RNA	18.5dpc hetero tdrd1 KO testes
360	GSM2500212	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
361	GSM2500213	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
362	GSM2500214	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
363	GSM2500215	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
364	GSM2500216	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
365	GSM2500217	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
441	GSM1096582	1	23523368	small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	13	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	48	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	21	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	52	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	1	23523368	small RNA	Wild Type 17.5 dpp testes

2451 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	17:40800328-40800357:+	Crisp2 ENSMUST00000124399;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16778019	Journal	Science. 2006 Jul 21;313(5785):363-7.
Title	Characterization of the piRNA complex from rat testes.
Authors	Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.

PubMed	20439430	Journal	Genes Dev. 2010 May;24(9):887-92.
Title	MVH in piRNA processing and gene silencing of retrotransposons.
Authors	Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	31358756	Journal	Nat Commun. 2019 Jul 29;10(1):3389. doi: 10.1038/s41467-019-11312-8.
Title	Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes.
Authors	Yang Q, Li R, Lyu Q, Hou L, Liu Z, Sun Q, Liu M, Shi H, Xu B, Yin M, Yan Z,Huang Y, Liu M, Li Y, Wu L.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.