Detail Information of piRNA: piR-mmu-3170

Dataset	Accession	Reads	PubMed	Method	Tissue
4	N/A	N/A	16751776	small RNA	testis
11	GSM822760	181	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/+
12	GSM822758	1208	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
13	GSM822759	432	22121019	Miwi IP	Testes, C57BL/6 P20 Miwi +/+
14	GSM822761	1502	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/ADH
15	GSM822762	342	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
16	GSM822763	488	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
17	GSM822764	195	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
50	GSM610965	41	21602304	small RNA	Male germ cell, Type A spermatogonia
51	GSM610966	152	21602304	small RNA	Male germ cell, Pachytene spermatocytes
52	GSM610967	117	21602304	small RNA	Male germ cell, Round spermatids
57	GSM319953	5	18922463	Mili IP	10 dpp Dnmt3L heterozygotes testis
58	GSM319954	7	18922463	Mili IP	10 dpp Dnmt3L KO testis
59	GSM319955	9	18922463	small RNA	16.5 dpc testis
61	GSM319957	1	18922463	Miwi2 IP	16.5 dpc testis
66	GSM509275	19	20439430	small RNA	MitoPLD+/+ E16.5 testis
68	GSM509277	10	20439430	small RNA	Mili-/- E16.5 testis
69	GSM509278	66	20439430	small RNA	Miwi2-/- E16.5 testis
70	GSM509279	13	20439430	small RNA	MVH-/- E16.5 testis
71	GSM509280	3	20439430	small RNA	MitoPLD-/- 10 dpp testis
73	N/A	1	22020280	Mili IP	Mili_MiliDAH_1 E16.5 fetal testis
74	N/A	1	22020280	Mili IP	Mili_MiliDAH_2 E16.5 fetal testis
75	N/A	5	22020280	Mili IP	Miwi2DAH_1 E16.5 fetal testis
77	N/A	6	22020280	Mili IP	Miwi2+/-_1 E16.5 fetal testis
78	N/A	1	22020280	Mili IP	Miwi2+/-_2 E16.5 fetal testis
81	N/A	1	22020280	Mili IP	wild_type_1 E16.5 fetal testis
82	N/A	1	22020280	Mili IP	wild_type_2 E16.5 fetal testis
85	N/A	1	22020280	Miwi2 IP	Miwi2DAH_1 E16.5 fetal testis
86	N/A	5	22020280	Miwi2 IP	Miwi2DAH_2 E16.5 fetal testis
87	N/A	3	22020280	Miwi2 IP	wild_type_1 E16.5 fetal testis
88	N/A	1	22020280	Miwi2 IP	wild_type_2 E16.5 fetal testis
115	GSM958036	2	22902560	Mili IP	Fkbp6 -/-,P0,testis
116	GSM958037	33	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	61	22902560	Mili IP	Fkbp6 -/-,P10,testis
119	GSM958040	4	22902560	Mili IP	Tdrd1 -/-,E18,testis
120	GSM958041	38	22902560	Miwi2 IP	Tdrd1 +/-,E18,testis
224	GSM1528806	21	26588211	small RNA	10dpp testes
225	GSM1528807	39	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	111	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	59	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	53	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	8	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	20	26115953	small RNA	18dpp homo tdrd6 KO testes
236	GSM433290	22	26115953	small RNA	25dpp hetero tdrd6 KO testes
237	GSM433291	3	26115953	small RNA	25dpp homo tdrd6 KO testes
240	GSM433294	25	26115953	small RNA	18.5dpc hetero tdrd1 KO testes
246	GSM1318059	10	25262350	small RNA	E16.5 whole testes
247	GSM1318060	2	25262350	small RNA	E16.5 whole testes Hsp90-alpha KO
348	GSM3772906	144	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349	GSM3772907	96	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350	GSM3772908	85	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351	GSM3772909	68	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352	GSM3772910	64	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
353	GSM3772911	66	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
441	GSM1096582	12	23523368	small RNA	Wild Type 10.5 dpp testes
442	GSM1096599	62	23523368	oxidized small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	26	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	10	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	83	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	13	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	27	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	1	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	51	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	1	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	52	23523368	small RNA	Wild Type 6 weeks dpp testes

28885 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	12:86773443-86773473:-		Low_complexity Low_complexity A-rich;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16751776	Journal	Nature. 2006 Jul 13;442(7099):199-202.
Title	A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors	Girard A, Sachidanandam R, Hannon GJ, Carmell MA.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	20439430	Journal	Genes Dev. 2010 May;24(9):887-92.
Title	MVH in piRNA processing and gene silencing of retrotransposons.
Authors	Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	25262350	Journal	Nucleic Acids Res. 2014 Oct 29;42(19):11903-11
Title	HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse.
Authors	Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H.

PubMed	32674113	Journal	Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title	SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors	Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.