Detail Information of piRNA: piR-mmu-31127

Dataset	Accession	Reads	PubMed	Method	Tissue
6	GSM113695	1	16778019	Chromatography	testes tissue from Swiss Webster male mice, 8-10 weeks old
50	GSM610965	4	21602304	small RNA	Male germ cell, Type A spermatogonia
51	GSM610966	3	21602304	small RNA	Male germ cell, Pachytene spermatocytes
52	GSM610967	1	21602304	small RNA	Male germ cell, Round spermatids
58	GSM319954	9	18922463	Mili IP	10 dpp Dnmt3L KO testis
59	GSM319955	42	18922463	small RNA	16.5 dpc testis
61	GSM319957	21	18922463	Miwi2 IP	16.5 dpc testis
71	GSM509280	1	20439430	small RNA	MitoPLD-/- 10 dpp testis
115	GSM958036	1	22902560	Mili IP	Fkbp6 -/-,P0,testis
116	GSM958037	4	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	11	22902560	Mili IP	Fkbp6 -/-,P10,testis
120	GSM958041	2	22902560	Miwi2 IP	Tdrd1 +/-,E18,testis
132	GSM475279	40	20022248	Miwi IP	adult testis
133	GSM475280	2	20022248	Mili IP	adult testis
225	GSM1528807	7	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	13	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	20	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	12	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	8	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	30	26115953	small RNA	18dpp homo tdrd6 KO testes
236	GSM433290	15	26115953	small RNA	25dpp hetero tdrd6 KO testes
237	GSM433291	12	26115953	small RNA	25dpp homo tdrd6 KO testes
240	GSM433294	8	26115953	small RNA	18.5dpc hetero tdrd1 KO testes
345	GSM475279	40	20022248	Miwi-IP	testis
346	GSM475280	2	20022248	Mili-IP	testis
347	GSM475281	5	20022248	small RNA	testis
348	GSM3772906	4	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349	GSM3772907	2	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350	GSM3772908	5	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351	GSM3772909	3	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352	GSM3772910	3	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
353	GSM3772911	5	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
364	GSM2500216	N/A	31358756	samll RNA(CAS-seq)	oocyte(age: 8 to 10 weeks old, female mice; B6D2F1)
441	GSM1096582	4	23523368	small RNA	Wild Type 10.5 dpp testes
444	GSM1096600	14	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	9	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	32	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	2	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	1	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	5	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	1	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	2	23523368	small RNA	Wild Type 6 weeks dpp testes

2270 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	1:5748550-5748577:+		LTR ERVK MMETn-int;
Hits not all shown! To search for more loci, you can Run Bowtie here or Blat in UCSC

PubMed	16778019	Journal	Science. 2006 Jul 21;313(5785):363-7.
Title	Characterization of the piRNA complex from rat testes.
Authors	Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	20439430	Journal	Genes Dev. 2010 May;24(9):887-92.
Title	MVH in piRNA processing and gene silencing of retrotransposons.
Authors	Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	32674113	Journal	Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title	SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors	Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.

PubMed	31358756	Journal	Nat Commun. 2019 Jul 29;10(1):3389. doi: 10.1038/s41467-019-11312-8.
Title	Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes.
Authors	Yang Q, Li R, Lyu Q, Hou L, Liu Z, Sun Q, Liu M, Shi H, Xu B, Yin M, Yan Z,Huang Y, Liu M, Li Y, Wu L.

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.