Detail Information of piRNA: piR-mmu-3025

Dataset	Accession	Reads	PubMed	Method	Tissue
4	N/A	N/A	16751776	small RNA	testis
11	GSM822760	10	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/+
12	GSM822758	24	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
13	GSM822759	9	22121019	Miwi IP	Testes, C57BL/6 P20 Miwi +/+
14	GSM822761	33	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/ADH
15	GSM822762	3	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
16	GSM822763	74	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
17	GSM822764	71	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
31	GSM684624	5	22842725	Miwi CLIP	C57BL/6 adult testis
35	GSM684620	17	22842725	Mili CLIP	C57BL/6 adult testis
51	GSM610966	11	21602304	small RNA	Male germ cell, Pachytene spermatocytes
52	GSM610967	26	21602304	small RNA	Male germ cell, Round spermatids
57	GSM319953	1	18922463	Mili IP	10 dpp Dnmt3L heterozygotes testis
58	GSM319954	1	18922463	Mili IP	10 dpp Dnmt3L KO testis
66	GSM509275	3	20439430	small RNA	MitoPLD+/+ E16.5 testis
67	GSM509276	1	20439430	small RNA	MitoPLD-/- E16.5 testis
68	GSM509277	2	20439430	small RNA	Mili-/- E16.5 testis
78	N/A	1	22020280	Mili IP	Miwi2+/-_2 E16.5 fetal testis
116	GSM958037	6	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	13	22902560	Mili IP	Fkbp6 -/-,P10,testis
119	GSM958040	2	22902560	Mili IP	Tdrd1 -/-,E18,testis
120	GSM958041	1	22902560	Miwi2 IP	Tdrd1 +/-,E18,testis
217	GSM1653802	16	25582079	MIWI CLIP	round spermatids
225	GSM1528807	98	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	122	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	148	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	180	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	39	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	65	26115953	small RNA	18dpp homo tdrd6 KO testes
236	GSM433290	51	26115953	small RNA	25dpp hetero tdrd6 KO testes
237	GSM433291	23	26115953	small RNA	25dpp homo tdrd6 KO testes
441	GSM1096582	53	23523368	small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	648	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	450	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	949	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	560	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	36	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	41	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	118	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	202	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	65	23523368	small RNA	Wild Type 6 weeks dpp testes
452	GSM1096604	63	23523368	oxidized small RNA	Wild Type 6 weeks dpp testes

2 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	4:62225951-62225979:-	Zfp37 ENSMUST00000212325;
Location 2	4:62233551-62233579:+		SINE B4 RSINE1;

PubMed	16751776	Journal	Nature. 2006 Jul 13;442(7099):199-202.
Title	A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors	Girard A, Sachidanandam R, Hannon GJ, Carmell MA.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	22842725	Journal	Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title	Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors	Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	20439430	Journal	Genes Dev. 2010 May;24(9):887-92.
Title	MVH in piRNA processing and gene silencing of retrotransposons.
Authors	Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	25582079	Journal	Cell Res. 2015 Feb;25(2):193-207.
Title	MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors	Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.