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Detail Information of piRNA: piR-mmu-2679

General Information
piRBase Id piR-mmu-2679 Accession DQ703356
Organism Mouse Number of methods 5
Sequence TGCTGTGTAAGAAACCACCTGCAATGGCGA Number of papers 14
Length 30 Golden piRNA -
Aliases piR-19377; piR-118678; PIR12376; PIR212004;
Datasets
Dataset Accession Reads PubMed Method Tissue
4 N/A N/A 16751776 small RNA testis
6 GSM113695 3 16778019 Chromatography testes tissue from Swiss Webster male mice, 8-10 weeks old
11 GSM822760 8 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/+
12 GSM822758 51 22121019 Miwi IP Testes, C57BL/6 P14 Miwi +/+
13 GSM822759 64 22121019 Miwi IP Testes, C57BL/6 P20 Miwi +/+
14 GSM822761 22 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/ADH
15 GSM822762 2 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
17 GSM822764 2 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
31 GSM684624 133 22842725 Miwi CLIP C57BL/6 adult testis
32 GSM684625 23 22842725 Miwi CLIP C57BL/6 adult testis
33 GSM684626 30 22842725 Miwi CLIP C57BL/6 adult testis
37 GSM684622 86 22842725 Mili CLIP C57BL/6 adult testis
50 GSM610965 1 21602304 small RNA Male germ cell, Type A spermatogonia
51 GSM610966 10 21602304 small RNA Male germ cell, Pachytene spermatocytes
52 GSM610967 461 21602304 small RNA Male germ cell, Round spermatids
66 GSM509275 2 20439430 small RNA MitoPLD+/+ E16.5 testis
68 GSM509277 1 20439430 small RNA Mili-/- E16.5 testis
115 GSM958036 1 22902560 Mili IP Fkbp6 -/-,P0,testis
117 GSM958038 5 22902560 Mili IP Fkbp6 -/-,P10,testis
121 GSM545783 2 20534472 Mov10L1 IP wild type adult testis
126 GSM466728 4 20059948 Mili IP Tdrd9+/- 14dpp testis
129 GSM466729 2 20059948 Mili IP Tdrd9+/- 14dpp testis
130 GSM466730 4 20059948 Mili IP Tdrd9-/- 14dpp testis
131 GSM466731 3 20059948 Mili IP Tdrd9-/- 14dpp testis
217 GSM1653802 66 25582079 MIWI CLIP round spermatids
225 GSM1528807 832 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 727 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 1707 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 1515 26588211 small RNA Adult testes Asb1 ao36(KO)
234 GSM433288 30 26115953 small RNA 18dpp hetero tdrd6 KO testes
235 GSM433289 76 26115953 small RNA 18dpp homo tdrd6 KO testes
236 GSM433290 93 26115953 small RNA 25dpp hetero tdrd6 KO testes
237 GSM433291 8 26115953 small RNA 25dpp homo tdrd6 KO testes
347 GSM475281 1 20022248 small RNA testis 
441 GSM1096582 24 23523368 small RNA Wild Type 10.5 dpp testes
442 GSM1096599 79 23523368 oxidized small RNA Wild Type 10.5 dpp testes
443 GSM1096583 40 23523368 small RNA Wild Type 12.5 dpp testes
444 GSM1096600 4 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 76 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 182 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 108 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 60 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 170 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 155 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 177 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 132 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 10:61430916-61430946:- Eif4ebp2 ENSMUST00000020288;
piRNA Expression
Sample CPM
GSM179088 0
GSM261957 0
GSM261958 0
GSM261959 0
GSM319953 0
GSM319954 0
GSM319955 0
GSM319956 0
GSM319957 0
GSM319958 0
GSM319959 0
GSM319960 0
GSM319961 0
GSM400967 0.6213
Sample CPM
GSM400968 0
GSM400969 1.3377
GSM433288 7.0257
GSM433289 16.6243
GSM433290 19.7508
GSM433291 2.8458
GSM433292 23.3403
GSM433293 19.1422
GSM433294 0
GSM433295 0
GSM475279 0
GSM475280 0
GSM475281 0.0938
GSM678422 0
The Expression of piRNA: piR-mmu-2679
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751776 Journal Nature. 2006 Jul 13;442(7099):199-202.
Title A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
PubMed 16778019 Journal Science. 2006 Jul 21;313(5785):363-7.
Title Characterization of the piRNA complex from rat testes.
Authors Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.
PubMed 22121019 Journal Nature. 2011 Nov 27;480(7376):264-7.
Title Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.
PubMed 22842725 Journal Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.
PubMed 21602304 Journal RNA. 2011 Jul;17(7):1191-203.
Title piRNA profiling during specific stages of mouse spermatogenesis.
Authors Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.
PubMed 20439430 Journal Genes Dev. 2010 May;24(9):887-92.
Title MVH in piRNA processing and gene silencing of retrotransposons.
Authors Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.
PubMed 22902560 Journal Mol Cell. 2012 Sep 28;47(6):970-9.
Title A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.
PubMed 20534472 Journal Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11841-6.
Title Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway.
Authors Zheng K, Xiol J, Reuter M, Eckardt S, Leu NA, McLaughlin KJ, Stark A, Sachidanandam R, Pillai RS, Wang PJ.
PubMed 20059948 Journal Dev Cell. 2009 Dec;17(6):775-87.
Title The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.
Authors Shoji M, Tanaka T, Hosokawa M, Reuter M, Stark A, Kato Y, Kondoh G, Okawa K, Chujo T, Suzuki T, Hata K, Martin SL, Noce T, Kuramochi-Miyagawa S, Nakano T, Sasaki H, Pillai RS, Nakatsuji N, Chuma S.
PubMed 25582079 Journal Cell Res. 2015 Feb;25(2):193-207.
Title MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 26115953 Journal Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ
PubMed 20022248 Journal Curr Biol. 2009 Dec 29;19(24):2066-76.
Title A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.