Detail Information of piRNA: piR-mmu-2460

Dataset	Accession	Reads	PubMed	Method	Tissue
4	N/A	N/A	16751776	small RNA	testis
51	GSM610966	1	21602304	small RNA	Male germ cell, Pachytene spermatocytes
57	GSM319953	91	18922463	Mili IP	10 dpp Dnmt3L heterozygotes testis
58	GSM319954	259	18922463	Mili IP	10 dpp Dnmt3L KO testis
62	GSM319958	1	18922463	small RNA	4-6 week ovary
72	GSM179088	4	17446352	Mili IP	10 dpp testis
73	N/A	1	22020280	Mili IP	Mili_MiliDAH_1 E16.5 fetal testis
116	GSM958037	1	22902560	Mili IP	Fkbp6 +/-,P10,testis
121	GSM545783	1	20534472	Mov10L1 IP	wild type adult testis
129	GSM466729	3	20059948	Mili IP	Tdrd9+/- 14dpp testis
132	GSM475279	1	20022248	Miwi IP	adult testis
133	GSM475280	17	20022248	Mili IP	adult testis
224	GSM1528806	53	26588211	small RNA	10dpp testes
225	GSM1528807	4	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	11	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	16	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	22	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	11	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	11	26115953	small RNA	18dpp homo tdrd6 KO testes
236	GSM433290	7	26115953	small RNA	25dpp hetero tdrd6 KO testes
237	GSM433291	5	26115953	small RNA	25dpp homo tdrd6 KO testes
345	GSM475279	1	20022248	Miwi-IP	testis
346	GSM475280	17	20022248	Mili-IP	testis
347	GSM475281	6	20022248	small RNA	testis
441	GSM1096582	9	23523368	small RNA	Wild Type 10.5 dpp testes
442	GSM1096599	1522	23523368	oxidized small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	127	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	395	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	501	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	1140	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	6	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	22	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	27	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	27	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	10	23523368	small RNA	Wild Type 6 weeks dpp testes
452	GSM1096604	14	23523368	oxidized small RNA	Wild Type 6 weeks dpp testes

1 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	6:128184926-128184953:-		SINE B2 B2_Mm1a;

PubMed	16751776	Journal	Nature. 2006 Jul 13;442(7099):199-202.
Title	A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors	Girard A, Sachidanandam R, Hannon GJ, Carmell MA.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	17446352	Journal	Science. 2007 May 4;316(5825):744-7.
Title	Developmentally regulated piRNA clusters implicate MILI in transposon control.
Authors	Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20534472	Journal	Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11841-6.
Title	Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway.
Authors	Zheng K, Xiol J, Reuter M, Eckardt S, Leu NA, McLaughlin KJ, Stark A, Sachidanandam R, Pillai RS, Wang PJ.

PubMed	20059948	Journal	Dev Cell. 2009 Dec;17(6):775-87.
Title	The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.
Authors	Shoji M, Tanaka T, Hosokawa M, Reuter M, Stark A, Kato Y, Kondoh G, Okawa K, Chujo T, Suzuki T, Hata K, Martin SL, Noce T, Kuramochi-Miyagawa S, Nakano T, Sasaki H, Pillai RS, Nakatsuji N, Chuma S.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.