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Detail Information of piRNA: piR-mmu-24

General Information
piRBase Id piR-mmu-24 Accession DQ697982
Organism Mouse Number of methods 5
Sequence TGCAAGGTTACTTTTCAGGGTGTGTCGGG Number of papers 8
Length 29 Golden piRNA -
Aliases piR-17021; piR-113304; PIR10020; PIR206630;
Datasets
Dataset Accession Reads PubMed Method Tissue
4 N/A N/A 16751776 small RNA testis
6 GSM113695 1 16778019 Chromatography testes tissue from Swiss Webster male mice, 8-10 weeks old
11 GSM822760 28 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/+
12 GSM822758 43 22121019 Miwi IP Testes, C57BL/6 P14 Miwi +/+
13 GSM822759 16 22121019 Miwi IP Testes, C57BL/6 P20 Miwi +/+
14 GSM822761 19 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/ADH
15 GSM822762 4 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
16 GSM822763 30 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
17 GSM822764 13 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
31 GSM684624 1 22842725 Miwi CLIP C57BL/6 adult testis
34 GSM684627 5 22842725 Miwi CLIP C57BL/6 adult testis
121 GSM545783 9 20534472 Mov10L1 IP wild type adult testis
217 GSM1653802 11 25582079 MIWI CLIP round spermatids
225 GSM1528807 16 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 18 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 21 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 24 26588211 small RNA Adult testes Asb1 ao36(KO)
443 GSM1096583 8 23523368 small RNA Wild Type 12.5 dpp testes
445 GSM1096584 12 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 11 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 2 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 3 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 9 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 15 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 4 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 6 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 2:92547944-92547973:+ LINE L1 L1M5;
piRNA Expression
Sample CPM
GSM179088 0
GSM261957 0
GSM261958 0
GSM261959 0
GSM319953 0
GSM319954 0
GSM319955 0
GSM319956 0
GSM319957 0
GSM319958 0
GSM319959 0
GSM319960 0
GSM319961 0
GSM400967 0.3107
Sample CPM
GSM400968 0
GSM400969 0.3344
GSM433288 0
GSM433289 0
GSM433290 0
GSM433291 0
GSM433292 0.2431
GSM433293 0.4254
GSM433294 0
GSM433295 0
GSM475279 0
GSM475280 0
GSM475281 0
GSM678422 0
The Expression of piRNA: piR-mmu-24
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751776 Journal Nature. 2006 Jul 13;442(7099):199-202.
Title A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
PubMed 16778019 Journal Science. 2006 Jul 21;313(5785):363-7.
Title Characterization of the piRNA complex from rat testes.
Authors Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.
PubMed 22121019 Journal Nature. 2011 Nov 27;480(7376):264-7.
Title Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.
PubMed 22842725 Journal Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.
PubMed 20534472 Journal Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11841-6.
Title Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway.
Authors Zheng K, Xiol J, Reuter M, Eckardt S, Leu NA, McLaughlin KJ, Stark A, Sachidanandam R, Pillai RS, Wang PJ.
PubMed 25582079 Journal Cell Res. 2015 Feb;25(2):193-207.
Title MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.