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Detail Information of piRNA: piR-mmu-18443

General Information
piRBase Id piR-mmu-18443 Accession DQ689086
Organism Mouse Number of methods 4
Sequence TGCAATGATGTCATCTTACTACTGAAA Number of papers 14
Length 27 Golden piRNA -
Aliases piR-104408; PIR197734;
Datasets
Dataset Accession Reads PubMed Method Tissue
6 GSM113695 1 16778019 Chromatography testes tissue from Swiss Webster male mice, 8-10 weeks old
50 GSM610965 575 21602304 small RNA Male germ cell, Type A spermatogonia
51 GSM610966 31 21602304 small RNA Male germ cell, Pachytene spermatocytes
52 GSM610967 125 21602304 small RNA Male germ cell, Round spermatids
58 GSM319954 1 18922463 Mili IP 10 dpp Dnmt3L KO testis
59 GSM319955 10 18922463 small RNA 16.5 dpc testis
61 GSM319957 2 18922463 Miwi2 IP 16.5 dpc testis
62 GSM319958 1685 18922463 small RNA 4-6 week ovary
73 N/A 1 22020280 Mili IP Mili_MiliDAH_1 E16.5 fetal testis
74 N/A 2 22020280 Mili IP Mili_MiliDAH_2 E16.5 fetal testis
76 N/A 2 22020280 Mili IP Miwi2DAH_2 E16.5 fetal testis
78 N/A 1 22020280 Mili IP Miwi2+/-_2 E16.5 fetal testis
81 N/A 1 22020280 Mili IP wild_type_1 E16.5 fetal testis
84 N/A 1 22020280 Miwi2 IP MiliDAH_2 E16.5 fetal testis
85 N/A 2 22020280 Miwi2 IP Miwi2DAH_1 E16.5 fetal testis
86 N/A 5 22020280 Miwi2 IP Miwi2DAH_2 E16.5 fetal testis
88 N/A 2 22020280 Miwi2 IP wild_type_2 E16.5 fetal testis
116 GSM958037 1 22902560 Mili IP Fkbp6 +/-,P10,testis
120 GSM958041 11 22902560 Miwi2 IP Tdrd1 +/-,E18,testis
121 GSM545783 2 20534472 Mov10L1 IP wild type adult testis
122 N/A 1514 21515829 small RNA hippocampus
126 GSM466728 5 20059948 Mili IP Tdrd9+/- 14dpp testis
129 GSM466729 2 20059948 Mili IP Tdrd9+/- 14dpp testis
131 GSM466731 1 20059948 Mili IP Tdrd9-/- 14dpp testis
132 GSM475279 195 20022248 Miwi IP adult testis
133 GSM475280 69 20022248 Mili IP adult testis
224 GSM1528806 164 26588211 small RNA 10dpp testes
225 GSM1528807 1538 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 1339 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 1248 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 767 26588211 small RNA Adult testes Asb1 ao36(KO)
234 GSM433288 174 26115953 small RNA 18dpp hetero tdrd6 KO testes
235 GSM433289 61 26115953 small RNA 18dpp homo tdrd6 KO testes
236 GSM433290 88 26115953 small RNA 25dpp hetero tdrd6 KO testes
237 GSM433291 50 26115953 small RNA 25dpp homo tdrd6 KO testes
240 GSM433294 189 26115953 small RNA 18.5dpc hetero tdrd1 KO testes
246 GSM1318059 282 25262350 small RNA E16.5 whole testes
247 GSM1318060 246 25262350 small RNA E16.5 whole testes Hsp90-alpha KO
345 GSM475279 195 20022248 Miwi-IP testis 
346 GSM475280 69 20022248 Mili-IP testis 
347 GSM475281 852 20022248 small RNA testis 
348 GSM3772906 2337 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349 GSM3772907 2054 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350 GSM3772908 4170 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351 GSM3772909 2534 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352 GSM3772910 2473 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
353 GSM3772911 2214 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
441 GSM1096582 1203 23523368 small RNA Wild Type 10.5 dpp testes
442 GSM1096599 679 23523368 oxidized small RNA Wild Type 10.5 dpp testes
443 GSM1096583 8765 23523368 small RNA Wild Type 12.5 dpp testes
444 GSM1096600 801 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 17058 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 1837 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 403 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 11 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 528 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 6 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 615 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 7 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 19:8724573-8724600:+ Snhg1 ENSMUST00000206155; Snhg1 ENSMUST00000206519; Snhg1 ENSMUST00000205539; Snhg1 ENSMUST00000205909; Snhg1 ENSMUST00000205274; Snhg1 ENSMUST00000206113; Snhg1 ENSMUST00000205825; Snhg1 ENSMUST00000206135; Snhg1 ENSMUST00000205389; Snhg1 ENSMUST00000205576; Snhg1 ENSMUST00000206961; Snhg1 ENSMUST00000206926; Gm24452 ENSMUST00000083347;
piRNA Expression
Sample CPM
GSM179088 0
GSM261957 0
GSM261958 18.9076
GSM261959 3.7548
GSM319953 0
GSM319954 0.4649
GSM319955 6.0681
GSM319956 0
GSM319957 1.0308
GSM319958 2715.1232
GSM319959 0
GSM319960 0
GSM319961 0
GSM400967 0
Sample CPM
GSM400968 0
GSM400969 0
GSM433288 40.7489
GSM433289 13.3432
GSM433290 18.6889
GSM433291 17.7864
GSM433292 8.9957
GSM433293 14.463
GSM433294 44.3489
GSM433295 63.5024
GSM475279 18.7302
GSM475280 6.2735
GSM475281 79.9284
GSM678422 8.012
The Expression of piRNA: piR-mmu-18443
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16778019 Journal Science. 2006 Jul 21;313(5785):363-7.
Title Characterization of the piRNA complex from rat testes.
Authors Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.
PubMed 21602304 Journal RNA. 2011 Jul;17(7):1191-203.
Title piRNA profiling during specific stages of mouse spermatogenesis.
Authors Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.
PubMed 18922463 Journal Mol Cell. 2008 Sep 26;31(6):785-99.
Title A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.
PubMed 22020280 Journal Nature. 2011 Oct 23;480(7376):259-63.
Title The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.
PubMed 22902560 Journal Mol Cell. 2012 Sep 28;47(6):970-9.
Title A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.
PubMed 20534472 Journal Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11841-6.
Title Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway.
Authors Zheng K, Xiol J, Reuter M, Eckardt S, Leu NA, McLaughlin KJ, Stark A, Sachidanandam R, Pillai RS, Wang PJ.
PubMed 21515829 Journal RNA. 2011 Jun;17(6):1090-9.
Title Identification of piRNAs in the central nervous system.
Authors Lee EJ, Banerjee S, Zhou H, Jammalamadaka A, Arcila M, Manjunath BS, Kosik KS.
PubMed 20059948 Journal Dev Cell. 2009 Dec;17(6):775-87.
Title The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.
Authors Shoji M, Tanaka T, Hosokawa M, Reuter M, Stark A, Kato Y, Kondoh G, Okawa K, Chujo T, Suzuki T, Hata K, Martin SL, Noce T, Kuramochi-Miyagawa S, Nakano T, Sasaki H, Pillai RS, Nakatsuji N, Chuma S.
PubMed 20022248 Journal Curr Biol. 2009 Dec 29;19(24):2066-76.
Title A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 26115953 Journal Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ
PubMed 25262350 Journal Nucleic Acids Res. 2014 Oct 29;42(19):11903-11
Title HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse.
Authors Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H.
PubMed 32674113 Journal Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.