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piRBase Id | piR-mmu-18443 | Accession | DQ689086 |
---|---|---|---|
Organism | Mouse | Number of methods | 4 |
Sequence | TGCAATGATGTCATCTTACTACTGAAA | Number of papers | 14 |
Length | 27 | Golden piRNA | - |
Aliases | piR-104408; PIR197734; |
Dataset | Accession | Reads | PubMed | Method | Tissue |
---|---|---|---|---|---|
6 | GSM113695 | 1 | 16778019 | Chromatography | testes tissue from Swiss Webster male mice, 8-10 weeks old |
50 | GSM610965 | 575 | 21602304 | small RNA | Male germ cell, Type A spermatogonia |
51 | GSM610966 | 31 | 21602304 | small RNA | Male germ cell, Pachytene spermatocytes |
52 | GSM610967 | 125 | 21602304 | small RNA | Male germ cell, Round spermatids |
58 | GSM319954 | 1 | 18922463 | Mili IP | 10 dpp Dnmt3L KO testis |
59 | GSM319955 | 10 | 18922463 | small RNA | 16.5 dpc testis |
61 | GSM319957 | 2 | 18922463 | Miwi2 IP | 16.5 dpc testis |
62 | GSM319958 | 1685 | 18922463 | small RNA | 4-6 week ovary |
73 | N/A | 1 | 22020280 | Mili IP | Mili_MiliDAH_1 E16.5 fetal testis |
74 | N/A | 2 | 22020280 | Mili IP | Mili_MiliDAH_2 E16.5 fetal testis |
76 | N/A | 2 | 22020280 | Mili IP | Miwi2DAH_2 E16.5 fetal testis |
78 | N/A | 1 | 22020280 | Mili IP | Miwi2+/-_2 E16.5 fetal testis |
81 | N/A | 1 | 22020280 | Mili IP | wild_type_1 E16.5 fetal testis |
84 | N/A | 1 | 22020280 | Miwi2 IP | MiliDAH_2 E16.5 fetal testis |
85 | N/A | 2 | 22020280 | Miwi2 IP | Miwi2DAH_1 E16.5 fetal testis |
86 | N/A | 5 | 22020280 | Miwi2 IP | Miwi2DAH_2 E16.5 fetal testis |
88 | N/A | 2 | 22020280 | Miwi2 IP | wild_type_2 E16.5 fetal testis |
116 | GSM958037 | 1 | 22902560 | Mili IP | Fkbp6 +/-,P10,testis |
120 | GSM958041 | 11 | 22902560 | Miwi2 IP | Tdrd1 +/-,E18,testis |
121 | GSM545783 | 2 | 20534472 | Mov10L1 IP | wild type adult testis |
122 | N/A | 1514 | 21515829 | small RNA | hippocampus |
126 | GSM466728 | 5 | 20059948 | Mili IP | Tdrd9+/- 14dpp testis |
129 | GSM466729 | 2 | 20059948 | Mili IP | Tdrd9+/- 14dpp testis |
131 | GSM466731 | 1 | 20059948 | Mili IP | Tdrd9-/- 14dpp testis |
132 | GSM475279 | 195 | 20022248 | Miwi IP | adult testis |
133 | GSM475280 | 69 | 20022248 | Mili IP | adult testis |
224 | GSM1528806 | 164 | 26588211 | small RNA | 10dpp testes |
225 | GSM1528807 | 1538 | 26588211 | small RNA | Adult testes Asb1 ao31(Het) |
226 | GSM1528808 | 1339 | 26588211 | small RNA | Adult testes Asb1 ao32(KO) |
227 | GSM1528809 | 1248 | 26588211 | small RNA | Adult testes Asb1 ao34(Het) |
228 | GSM1528810 | 767 | 26588211 | small RNA | Adult testes Asb1 ao36(KO) |
234 | GSM433288 | 174 | 26115953 | small RNA | 18dpp hetero tdrd6 KO testes |
235 | GSM433289 | 61 | 26115953 | small RNA | 18dpp homo tdrd6 KO testes |
236 | GSM433290 | 88 | 26115953 | small RNA | 25dpp hetero tdrd6 KO testes |
237 | GSM433291 | 50 | 26115953 | small RNA | 25dpp homo tdrd6 KO testes |
240 | GSM433294 | 189 | 26115953 | small RNA | 18.5dpc hetero tdrd1 KO testes |
246 | GSM1318059 | 282 | 25262350 | small RNA | E16.5 whole testes |
247 | GSM1318060 | 246 | 25262350 | small RNA | E16.5 whole testes Hsp90-alpha KO |
345 | GSM475279 | 195 | 20022248 | Miwi-IP | testis |
346 | GSM475280 | 69 | 20022248 | Mili-IP | testis |
347 | GSM475281 | 852 | 20022248 | small RNA | testis |
348 | GSM3772906 | 2337 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control) |
349 | GSM3772907 | 2054 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control) |
350 | GSM3772908 | 4170 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control) |
351 | GSM3772909 | 2534 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-) |
352 | GSM3772910 | 2473 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-) |
353 | GSM3772911 | 2214 | 32674113 | small RNA | E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-) |
441 | GSM1096582 | 1203 | 23523368 | small RNA | Wild Type 10.5 dpp testes |
442 | GSM1096599 | 679 | 23523368 | oxidized small RNA | Wild Type 10.5 dpp testes |
443 | GSM1096583 | 8765 | 23523368 | small RNA | Wild Type 12.5 dpp testes |
444 | GSM1096600 | 801 | 23523368 | oxidized small RNA | Wild Type 12.5 dpp testes |
445 | GSM1096584 | 17058 | 23523368 | small RNA | Wild Type 14.5 dpp testes |
446 | GSM1096601 | 1837 | 23523368 | oxidized small RNA | Wild Type 14.5 dpp testes |
447 | GSM1096585 | 403 | 23523368 | small RNA | Wild Type 17.5 dpp testes |
448 | GSM1096602 | 11 | 23523368 | oxidized small RNA | Wild Type 17.5 dpp testes |
449 | GSM1096586 | 528 | 23523368 | small RNA | Wild Type 20.5 dpp testes |
450 | GSM1096603 | 6 | 23523368 | oxidized small RNA | Wild Type 20.5 dpp testes |
451 | GSM1096587 | 615 | 23523368 | small RNA | Wild Type 6 weeks dpp testes |
452 | GSM1096604 | 7 | 23523368 | oxidized small RNA | Wild Type 6 weeks dpp testes |
No. | Location | Gene | RepeatMaker |
---|---|---|---|
Location 1 | 19:8724573-8724600:+ | Snhg1 ENSMUST00000206155; Snhg1 ENSMUST00000206519; Snhg1 ENSMUST00000205539; Snhg1 ENSMUST00000205909; Snhg1 ENSMUST00000205274; Snhg1 ENSMUST00000206113; Snhg1 ENSMUST00000205825; Snhg1 ENSMUST00000206135; Snhg1 ENSMUST00000205389; Snhg1 ENSMUST00000205576; Snhg1 ENSMUST00000206961; Snhg1 ENSMUST00000206926; Gm24452 ENSMUST00000083347; |
Sample | CPM |
---|---|
GSM179088 | 0 |
GSM261957 | 0 |
GSM261958 | 18.9076 |
GSM261959 | 3.7548 |
GSM319953 | 0 |
GSM319954 | 0.4649 |
GSM319955 | 6.0681 |
GSM319956 | 0 |
GSM319957 | 1.0308 |
GSM319958 | 2715.1232 |
GSM319959 | 0 |
GSM319960 | 0 |
GSM319961 | 0 |
GSM400967 | 0 |
Sample | CPM |
---|---|
GSM400968 | 0 |
GSM400969 | 0 |
GSM433288 | 40.7489 |
GSM433289 | 13.3432 |
GSM433290 | 18.6889 |
GSM433291 | 17.7864 |
GSM433292 | 8.9957 |
GSM433293 | 14.463 |
GSM433294 | 44.3489 |
GSM433295 | 63.5024 |
GSM475279 | 18.7302 |
GSM475280 | 6.2735 |
GSM475281 | 79.9284 |
GSM678422 | 8.012 |
No record. |
No record. |
No record. |
No record. |
PubMed | 16778019 | Journal | Science. 2006 Jul 21;313(5785):363-7. |
---|---|---|---|
Title | Characterization of the piRNA complex from rat testes. | ||
Authors | Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE. |
PubMed | 21602304 | Journal | RNA. 2011 Jul;17(7):1191-203. |
---|---|---|---|
Title | piRNA profiling during specific stages of mouse spermatogenesis. | ||
Authors | Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C. |
PubMed | 18922463 | Journal | Mol Cell. 2008 Sep 26;31(6):785-99. |
---|---|---|---|
Title | A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. | ||
Authors | Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ. |
PubMed | 22020280 | Journal | Nature. 2011 Oct 23;480(7376):259-63. |
---|---|---|---|
Title | The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements. | ||
Authors | De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D. |
PubMed | 22902560 | Journal | Mol Cell. 2012 Sep 28;47(6):970-9. |
---|---|---|---|
Title | A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing. | ||
Authors | Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS. |
PubMed | 20534472 | Journal | Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11841-6. |
---|---|---|---|
Title | Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway. | ||
Authors | Zheng K, Xiol J, Reuter M, Eckardt S, Leu NA, McLaughlin KJ, Stark A, Sachidanandam R, Pillai RS, Wang PJ. |
PubMed | 21515829 | Journal | RNA. 2011 Jun;17(6):1090-9. |
---|---|---|---|
Title | Identification of piRNAs in the central nervous system. | ||
Authors | Lee EJ, Banerjee S, Zhou H, Jammalamadaka A, Arcila M, Manjunath BS, Kosik KS. |
PubMed | 20059948 | Journal | Dev Cell. 2009 Dec;17(6):775-87. |
---|---|---|---|
Title | The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline. | ||
Authors | Shoji M, Tanaka T, Hosokawa M, Reuter M, Stark A, Kato Y, Kondoh G, Okawa K, Chujo T, Suzuki T, Hata K, Martin SL, Noce T, Kuramochi-Miyagawa S, Nakano T, Sasaki H, Pillai RS, Nakatsuji N, Chuma S. |
PubMed | 20022248 | Journal | Curr Biol. 2009 Dec 29;19(24):2066-76. |
---|---|---|---|
Title | A broadly conserved pathway generates 3'UTR-directed primary piRNAs. | ||
Authors | Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC. |
PubMed | 26588211 | Journal | PLoS Genet. 2015 Nov 20;11(11):e1005652 |
---|---|---|---|
Title | Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals | ||
Authors | Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC. |
PubMed | 26115953 | Journal | Genes Dev. 2015 Jul 1; 29(13): 1403?415 |
---|---|---|---|
Title | RNF17 blocks promiscuous activity of PIWI proteins in mouse testes | ||
Authors | Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ |
PubMed | 25262350 | Journal | Nucleic Acids Res. 2014 Oct 29;42(19):11903-11 |
---|---|---|---|
Title | HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse. | ||
Authors | Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H. |
PubMed | 32674113 | Journal | Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5. |
---|---|---|---|
Title | SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation. | ||
Authors | Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D. |
PubMed | 23523368 | Journal | Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016. |
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Title | An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes | ||
Authors | Li XZ, Roy CK, Dong X, Bolcun-Filas E et al. |