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Detail Information of piRNA: piR-mmu-17812

General Information
piRBase Id piR-mmu-17812 Accession DQ540861
Organism Mouse Number of methods 3
Sequence CCGGGTGATGCGAATCGTAATCTGAGC Number of papers 12
Length 27 Golden piRNA -
Aliases piR-973; PIR1972;
Datasets
Dataset Accession Reads PubMed Method Tissue
4 N/A N/A 16751776 small RNA testis
50 GSM610965 23 21602304 small RNA Male germ cell, Type A spermatogonia
51 GSM610966 8 21602304 small RNA Male germ cell, Pachytene spermatocytes
52 GSM610967 3 21602304 small RNA Male germ cell, Round spermatids
57 GSM319953 1 18922463 Mili IP 10 dpp Dnmt3L heterozygotes testis
59 GSM319955 157 18922463 small RNA 16.5 dpc testis
61 GSM319957 2 18922463 Miwi2 IP 16.5 dpc testis
62 GSM319958 3816 18922463 small RNA 4-6 week ovary
73 N/A 34 22020280 Mili IP Mili_MiliDAH_1 E16.5 fetal testis
74 N/A 57 22020280 Mili IP Mili_MiliDAH_2 E16.5 fetal testis
75 N/A 7 22020280 Mili IP Miwi2DAH_1 E16.5 fetal testis
76 N/A 49 22020280 Mili IP Miwi2DAH_2 E16.5 fetal testis
77 N/A 26 22020280 Mili IP Miwi2+/-_1 E16.5 fetal testis
78 N/A 11 22020280 Mili IP Miwi2+/-_2 E16.5 fetal testis
79 N/A 33 22020280 Mili IP Miwi2-/-_1 E16.5 fetal testis
81 N/A 44 22020280 Mili IP wild_type_1 E16.5 fetal testis
82 N/A 94 22020280 Mili IP wild_type_2 E16.5 fetal testis
83 N/A 66 22020280 Miwi2 IP MiliDAH_1 E16.5 fetal testis
84 N/A 22 22020280 Miwi2 IP MiliDAH_2 E16.5 fetal testis
85 N/A 81 22020280 Miwi2 IP Miwi2DAH_1 E16.5 fetal testis
86 N/A 69 22020280 Miwi2 IP Miwi2DAH_2 E16.5 fetal testis
87 N/A 54 22020280 Miwi2 IP wild_type_1 E16.5 fetal testis
88 N/A 53 22020280 Miwi2 IP wild_type_2 E16.5 fetal testis
118 GSM958039 1 22902560 Mili IP Tdrd1 +/-,E18,testis
122 N/A 252 21515829 small RNA hippocampus
132 GSM475279 2 20022248 Miwi IP adult testis
224 GSM1528806 10 26588211 small RNA 10dpp testes
225 GSM1528807 41 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 46 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 57 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 84 26588211 small RNA Adult testes Asb1 ao36(KO)
234 GSM433288 31 26115953 small RNA 18dpp hetero tdrd6 KO testes
235 GSM433289 43 26115953 small RNA 18dpp homo tdrd6 KO testes
236 GSM433290 22 26115953 small RNA 25dpp hetero tdrd6 KO testes
237 GSM433291 4 26115953 small RNA 25dpp homo tdrd6 KO testes
238 GSM433292 13 26115953 small RNA 6 weeks hetero tdrd6 KO testes
240 GSM433294 150 26115953 small RNA 18.5dpc hetero tdrd1 KO testes
246 GSM1318059 507 25262350 small RNA E16.5 whole testes
247 GSM1318060 476 25262350 small RNA E16.5 whole testes Hsp90-alpha KO
345 GSM475279 2 20022248 Miwi-IP testis 
347 GSM475281 19 20022248 small RNA testis 
348 GSM3772906 867 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349 GSM3772907 921 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350 GSM3772908 2104 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351 GSM3772909 1158 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352 GSM3772910 1284 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
353 GSM3772911 1198 32674113 small RNA E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
441 GSM1096582 399 23523368 small RNA Wild Type 10.5 dpp testes
442 GSM1096599 83 23523368 oxidized small RNA Wild Type 10.5 dpp testes
443 GSM1096583 3976 23523368 small RNA Wild Type 12.5 dpp testes
444 GSM1096600 117 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 11991 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 1307 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 103 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 1 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 146 23523368 small RNA Wild Type 20.5 dpp testes
451 GSM1096587 89 23523368 small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 11:106501035-106501062:+ Snord104 ENSMUST00000083192; LTR ERVL-MaLR ORR1B1-int; SINE Alu B1_Mus1;
piRNA Expression
Sample CPM
GSM179088 0
GSM261957 0
GSM261958 58.3669
GSM261959 0
GSM319953 0.7538
GSM319954 0
GSM319955 95.2694
GSM319956 0
GSM319957 1.0308
GSM319958 6148.908
GSM319959 0
GSM319960 0
GSM319961 0
GSM400967 0
Sample CPM
GSM400968 0
GSM400969 0
GSM433288 7.2599
GSM433289 9.4059
GSM433290 4.6722
GSM433291 1.4229
GSM433292 3.1607
GSM433293 1.2761
GSM433294 35.1976
GSM433295 48.043
GSM475279 0.1921
GSM475280 0
GSM475281 1.7824
GSM678422 33.7988
The Expression of piRNA: piR-mmu-17812
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751776 Journal Nature. 2006 Jul 13;442(7099):199-202.
Title A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
PubMed 21602304 Journal RNA. 2011 Jul;17(7):1191-203.
Title piRNA profiling during specific stages of mouse spermatogenesis.
Authors Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.
PubMed 18922463 Journal Mol Cell. 2008 Sep 26;31(6):785-99.
Title A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.
PubMed 22020280 Journal Nature. 2011 Oct 23;480(7376):259-63.
Title The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.
PubMed 22902560 Journal Mol Cell. 2012 Sep 28;47(6):970-9.
Title A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.
PubMed 21515829 Journal RNA. 2011 Jun;17(6):1090-9.
Title Identification of piRNAs in the central nervous system.
Authors Lee EJ, Banerjee S, Zhou H, Jammalamadaka A, Arcila M, Manjunath BS, Kosik KS.
PubMed 20022248 Journal Curr Biol. 2009 Dec 29;19(24):2066-76.
Title A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 26115953 Journal Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ
PubMed 25262350 Journal Nucleic Acids Res. 2014 Oct 29;42(19):11903-11
Title HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse.
Authors Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H.
PubMed 32674113 Journal Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.