Detail Information of piRNA: piR-mmu-1439

Dataset	Accession	Reads	PubMed	Method	Tissue
4	N/A	N/A	16751776	small RNA	testis
50	GSM610965	3	21602304	small RNA	Male germ cell, Type A spermatogonia
57	GSM319953	9	18922463	Mili IP	10 dpp Dnmt3L heterozygotes testis
58	GSM319954	32	18922463	Mili IP	10 dpp Dnmt3L KO testis
72	GSM179088	2	17446352	Mili IP	10 dpp testis
73	N/A	2	22020280	Mili IP	Mili_MiliDAH_1 E16.5 fetal testis
76	N/A	4	22020280	Mili IP	Miwi2DAH_2 E16.5 fetal testis
78	N/A	1	22020280	Mili IP	Miwi2+/-_2 E16.5 fetal testis
85	N/A	1	22020280	Miwi2 IP	Miwi2DAH_1 E16.5 fetal testis
114	GSM958035	2	22902560	Mili IP	Fkbp6 +/-,P0,testis
115	GSM958036	1	22902560	Mili IP	Fkbp6 -/-,P0,testis
116	GSM958037	22	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	35	22902560	Mili IP	Fkbp6 -/-,P10,testis
118	GSM958039	2	22902560	Mili IP	Tdrd1 +/-,E18,testis
121	GSM545783	1	20534472	Mov10L1 IP	wild type adult testis
126	GSM466728	81	20059948	Mili IP	Tdrd9+/- 14dpp testis
129	GSM466729	72	20059948	Mili IP	Tdrd9+/- 14dpp testis
130	GSM466730	28	20059948	Mili IP	Tdrd9-/- 14dpp testis
131	GSM466731	33	20059948	Mili IP	Tdrd9-/- 14dpp testis
132	GSM475279	1	20022248	Miwi IP	adult testis
224	GSM1528806	151	26588211	small RNA	10dpp testes
226	GSM1528808	1	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	1	26588211	small RNA	Adult testes Asb1 ao34(Het)
234	GSM433288	3	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	2	26115953	small RNA	18dpp homo tdrd6 KO testes
345	GSM475279	1	20022248	Miwi-IP	testis
441	GSM1096582	4	23523368	small RNA	Wild Type 10.5 dpp testes
442	GSM1096599	3512	23523368	oxidized small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	30	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	335	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	41	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	547	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
448	GSM1096602	2	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	2	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	6	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	1	23523368	small RNA	Wild Type 6 weeks dpp testes

1 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	5:38202291-38202316:-	Zbtb49 ENSMUST00000124939; Zbtb49 ENSMUST00000094833; Zbtb49 ENSMUST00000126267; Zbtb49 ENSMUST00000143436; Zbtb49 ENSMUST00000138820; Zbtb49 ENSMUST00000136475;

PubMed	16751776	Journal	Nature. 2006 Jul 13;442(7099):199-202.
Title	A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors	Girard A, Sachidanandam R, Hannon GJ, Carmell MA.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	17446352	Journal	Science. 2007 May 4;316(5825):744-7.
Title	Developmentally regulated piRNA clusters implicate MILI in transposon control.
Authors	Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20534472	Journal	Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11841-6.
Title	Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway.
Authors	Zheng K, Xiol J, Reuter M, Eckardt S, Leu NA, McLaughlin KJ, Stark A, Sachidanandam R, Pillai RS, Wang PJ.

PubMed	20059948	Journal	Dev Cell. 2009 Dec;17(6):775-87.
Title	The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.
Authors	Shoji M, Tanaka T, Hosokawa M, Reuter M, Stark A, Kato Y, Kondoh G, Okawa K, Chujo T, Suzuki T, Hata K, Martin SL, Noce T, Kuramochi-Miyagawa S, Nakano T, Sasaki H, Pillai RS, Nakatsuji N, Chuma S.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.