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Detail Information of piRNA: piR-mmu-1410

General Information
piRBase Id piR-mmu-1410 Accession DQ691206
Organism Mouse Number of methods 5
Sequence TGCCATTTGTGATTGGTATCTGCATGAGC Number of papers 12
Length 29 Golden piRNA -
Aliases piR-18281; piR-106528; PIR11280; PIR199854;
Datasets
Dataset Accession Reads PubMed Method Tissue
4 N/A N/A 16751776 small RNA testis
6 GSM113695 3 16778019 Chromatography testes tissue from Swiss Webster male mice, 8-10 weeks old
11 GSM822760 75 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/+
12 GSM822758 40 22121019 Miwi IP Testes, C57BL/6 P14 Miwi +/+
13 GSM822759 39 22121019 Miwi IP Testes, C57BL/6 P20 Miwi +/+
14 GSM822761 88 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/ADH
15 GSM822762 5 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
16 GSM822763 95 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
17 GSM822764 17 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
31 GSM684624 507 22842725 Miwi CLIP C57BL/6 adult testis
32 GSM684625 85 22842725 Miwi CLIP C57BL/6 adult testis
33 GSM684626 6 22842725 Miwi CLIP C57BL/6 adult testis
34 GSM684627 27 22842725 Miwi CLIP C57BL/6 adult testis
51 GSM610966 13 21602304 small RNA Male germ cell, Pachytene spermatocytes
52 GSM610967 158 21602304 small RNA Male germ cell, Round spermatids
116 GSM958037 2 22902560 Mili IP Fkbp6 +/-,P10,testis
117 GSM958038 4 22902560 Mili IP Fkbp6 -/-,P10,testis
126 GSM466728 1 20059948 Mili IP Tdrd9+/- 14dpp testis
129 GSM466729 3 20059948 Mili IP Tdrd9+/- 14dpp testis
130 GSM466730 1 20059948 Mili IP Tdrd9-/- 14dpp testis
131 GSM466731 1 20059948 Mili IP Tdrd9-/- 14dpp testis
132 GSM475279 1 20022248 Miwi IP adult testis
217 GSM1653802 128 25582079 MIWI CLIP round spermatids
224 GSM1528806 30 26588211 small RNA 10dpp testes
225 GSM1528807 1023 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 1212 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 695 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 203 26588211 small RNA Adult testes Asb1 ao36(KO)
234 GSM433288 6 26115953 small RNA 18dpp hetero tdrd6 KO testes
235 GSM433289 13 26115953 small RNA 18dpp homo tdrd6 KO testes
236 GSM433290 31 26115953 small RNA 25dpp hetero tdrd6 KO testes
237 GSM433291 25 26115953 small RNA 25dpp homo tdrd6 KO testes
345 GSM475279 1 20022248 Miwi-IP testis 
441 GSM1096582 6 23523368 small RNA Wild Type 10.5 dpp testes
443 GSM1096583 20 23523368 small RNA Wild Type 12.5 dpp testes
444 GSM1096600 38 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 63 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 239 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 15 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 30 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 61 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 82 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 123 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 193 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 15:83355782-83355811:- 1700001L05Rik ENSMUST00000178628;
piRNA Expression
Sample CPM
GSM400968 0
GSM400969 0.6688
GSM433288 1.4051
GSM433289 2.8436
GSM433290 6.5836
GSM433291 8.8932
GSM433292 10.6976
GSM433293 5.53
GSM433294 0
GSM433295 0
GSM475279 0.0961
GSM475280 0
GSM475281 0
GSM678422 0
The Expression of piRNA: piR-mmu-1410
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751776 Journal Nature. 2006 Jul 13;442(7099):199-202.
Title A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
PubMed 16778019 Journal Science. 2006 Jul 21;313(5785):363-7.
Title Characterization of the piRNA complex from rat testes.
Authors Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.
PubMed 22121019 Journal Nature. 2011 Nov 27;480(7376):264-7.
Title Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.
PubMed 22842725 Journal Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.
PubMed 21602304 Journal RNA. 2011 Jul;17(7):1191-203.
Title piRNA profiling during specific stages of mouse spermatogenesis.
Authors Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.
PubMed 22902560 Journal Mol Cell. 2012 Sep 28;47(6):970-9.
Title A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.
PubMed 20059948 Journal Dev Cell. 2009 Dec;17(6):775-87.
Title The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.
Authors Shoji M, Tanaka T, Hosokawa M, Reuter M, Stark A, Kato Y, Kondoh G, Okawa K, Chujo T, Suzuki T, Hata K, Martin SL, Noce T, Kuramochi-Miyagawa S, Nakano T, Sasaki H, Pillai RS, Nakatsuji N, Chuma S.
PubMed 20022248 Journal Curr Biol. 2009 Dec 29;19(24):2066-76.
Title A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.
PubMed 25582079 Journal Cell Res. 2015 Feb;25(2):193-207.
Title MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 26115953 Journal Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.