Detail Information of piRNA: piR-mmu-140079

Dataset	Accession	Reads	PubMed	Method	Tissue
11	GSM822760	7	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/+
12	GSM822758	5	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
13	GSM822759	1	22121019	Miwi IP	Testes, C57BL/6 P20 Miwi +/+
14	GSM822761	6	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/ADH
15	GSM822762	18	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
16	GSM822763	9	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
32	GSM684625	29	22842725	Miwi CLIP	C57BL/6 adult testis
50	GSM610965	2	21602304	small RNA	Male germ cell, Type A spermatogonia
52	GSM610967	4	21602304	small RNA	Male germ cell, Round spermatids
57	GSM319953	4	18922463	Mili IP	10 dpp Dnmt3L heterozygotes testis
58	GSM319954	1	18922463	Mili IP	10 dpp Dnmt3L KO testis
59	GSM319955	1	18922463	small RNA	16.5 dpc testis
60	GSM319956	25	18922463	Mili IP	16.5 dpc testis
61	GSM319957	36	18922463	Miwi2 IP	16.5 dpc testis
72	GSM179088	1	17446352	Mili IP	10 dpp testis
114	GSM958035	32	22902560	Mili IP	Fkbp6 +/-,P0,testis
115	GSM958036	17	22902560	Mili IP	Fkbp6 -/-,P0,testis
116	GSM958037	9	22902560	Mili IP	Fkbp6 +/-,P10,testis
117	GSM958038	3	22902560	Mili IP	Fkbp6 -/-,P10,testis
118	GSM958039	26	22902560	Mili IP	Tdrd1 +/-,E18,testis
119	GSM958040	10	22902560	Mili IP	Tdrd1 -/-,E18,testis
120	GSM958041	456	22902560	Miwi2 IP	Tdrd1 +/-,E18,testis
133	GSM475280	3	20022248	Mili IP	adult testis
217	GSM1653802	15	25582079	MIWI CLIP	round spermatids
225	GSM1528807	4	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	1	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	6	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	4	26588211	small RNA	Adult testes Asb1 ao36(KO)
240	GSM433294	3	26115953	small RNA	18.5dpc hetero tdrd1 KO testes
241	GSM433295	1	26115953	small RNA	18.5dpc homo tdrd1 KO testes
246	GSM1318059	1	25262350	small RNA	E16.5 whole testes
346	GSM475280	3	20022248	Mili-IP	testis
348	GSM3772906	6	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
349	GSM3772907	11	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
350	GSM3772908	27	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; control)
351	GSM3772909	102	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
352	GSM3772910	10	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)
353	GSM3772911	5	32674113	small RNA	E16.5 testes(mixed B6CBAF1/Crl and C57BL/6N; Spocd1-/-)

2 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	17:39847796-39847823:+	CT010467.1 ENSMUST00000198477;	Low_complexity Low_complexity A-rich;
Location 2	2:27121279-27121306:+	Fam163b ENSMUST00000151224;	Simple_repeat Simple_repeat (TGAA)n;

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	22842725	Journal	Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title	Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors	Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	17446352	Journal	Science. 2007 May 4;316(5825):744-7.
Title	Developmentally regulated piRNA clusters implicate MILI in transposon control.
Authors	Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	25582079	Journal	Cell Res. 2015 Feb;25(2):193-207.
Title	MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors	Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	25262350	Journal	Nucleic Acids Res. 2014 Oct 29;42(19):11903-11
Title	HSP90a plays an important role in piRNA biogenesis and retrotransposon repression in mouse.
Authors	Ichiyanagi T,Ichiyanagi K,Ogawa A,Kuramochi-Miyagawa S,Nakano T,Chuma S,Sasaki H,Udono H.

PubMed	32674113	Journal	Nature. 2020 Aug;584(7822):635-639. doi: 10.1038/s41586-020-2557-5.
Title	SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation.
Authors	Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D.