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Detail Information of piRNA: piR-mmu-11243

General Information
piRBase Id piR-mmu-11243 Accession DQ721607
Organism Mouse Number of methods 5
Sequence ACTGAATGATTCTTTTGGAGAAAATAGT Number of papers 11
Length 28 Golden piRNA Y
Aliases piR-136929; PIR190030; PIR230255;
Datasets
Dataset Accession Reads PubMed Method Tissue
5 N/A N/A 16751777 MILI IP testis
6 GSM113695 1 16778019 Chromatography testes tissue from Swiss Webster male mice, 8-10 weeks old
11 GSM822760 3 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/+
12 GSM822758 9 22121019 Miwi IP Testes, C57BL/6 P14 Miwi +/+
13 GSM822759 4 22121019 Miwi IP Testes, C57BL/6 P20 Miwi +/+
14 GSM822761 11 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/ADH
15 GSM822762 7 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
16 GSM822763 26 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
17 GSM822764 208 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
31 GSM684624 281 22842725 Miwi CLIP C57BL/6 adult testis
32 GSM684625 67 22842725 Miwi CLIP C57BL/6 adult testis
60 GSM319956 1 18922463 Mili IP 16.5 dpc testis
121 GSM545783 1 20534472 Mov10L1 IP wild type adult testis
132 GSM475279 188 20022248 Miwi IP adult testis
133 GSM475280 531 20022248 Mili IP adult testis
217 GSM1653802 43 25582079 MIWI CLIP round spermatids
225 GSM1528807 554 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 728 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 920 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 842 26588211 small RNA Adult testes Asb1 ao36(KO)
234 GSM433288 272 26115953 small RNA 18dpp hetero tdrd6 KO testes
235 GSM433289 629 26115953 small RNA 18dpp homo tdrd6 KO testes
236 GSM433290 441 26115953 small RNA 25dpp hetero tdrd6 KO testes
237 GSM433291 452 26115953 small RNA 25dpp homo tdrd6 KO testes
238 GSM433292 321 26115953 small RNA 6 weeks hetero tdrd6 KO testes
345 GSM475279 188 20022248 Miwi-IP testis 
346 GSM475280 531 20022248 Mili-IP testis 
347 GSM475281 225 20022248 small RNA testis 
441 GSM1096582 50 23523368 small RNA Wild Type 10.5 dpp testes
443 GSM1096583 3 23523368 small RNA Wild Type 12.5 dpp testes
444 GSM1096600 1 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 53 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 260 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 64 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 387 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 55 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 237 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 81 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 216 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 2:92587020-92587048:+
piRNA Expression
Sample CPM
GSM400968 1.9539
GSM400969 0
GSM433288 63.6994
GSM433289 137.5881
GSM433290 93.6568
GSM433291 160.7887
GSM433292 78.0442
GSM433293 60.8295
GSM433294 0
GSM433295 0
GSM475279 18.0579
GSM475280 48.2786
GSM475281 21.1079
GSM678422 0.0531
The Expression of piRNA: piR-mmu-11243
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751777 Journal Nature. 2006 Jul 13;442(7099):203-7.
Title A novel class of small RNAs bind to MILI protein in mouse testes
Authors Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, Iovino N, Morris P, Brownstein MJ, Kuramochi-Miyagawa S, Nakano T, Chien M, Russo JJ, Ju J, Sheridan R, Sander C, Zavolan M, Tuschl T.
PubMed 16778019 Journal Science. 2006 Jul 21;313(5785):363-7.
Title Characterization of the piRNA complex from rat testes.
Authors Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.
PubMed 22121019 Journal Nature. 2011 Nov 27;480(7376):264-7.
Title Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.
PubMed 22842725 Journal Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.
PubMed 18922463 Journal Mol Cell. 2008 Sep 26;31(6):785-99.
Title A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.
PubMed 20534472 Journal Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11841-6.
Title Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway.
Authors Zheng K, Xiol J, Reuter M, Eckardt S, Leu NA, McLaughlin KJ, Stark A, Sachidanandam R, Pillai RS, Wang PJ.
PubMed 20022248 Journal Curr Biol. 2009 Dec 29;19(24):2066-76.
Title A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.
PubMed 25582079 Journal Cell Res. 2015 Feb;25(2):193-207.
Title MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 26115953 Journal Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.