Detail Information of piRNA: piR-mmu-10540

Dataset	Accession	Reads	PubMed	Method	Tissue
5	N/A	N/A	16751777	MILI IP	testis
6	GSM113695	22	16778019	Chromatography	testes tissue from Swiss Webster male mice, 8-10 weeks old
11	GSM822760	12	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/+
12	GSM822758	22	22121019	Miwi IP	Testes, C57BL/6 P14 Miwi +/+
13	GSM822759	10	22121019	Miwi IP	Testes, C57BL/6 P20 Miwi +/+
14	GSM822761	44	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi +/ADH
15	GSM822762	23	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
16	GSM822763	4	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
17	GSM822764	4	22121019	Miwi IP	Testes, C57BL/6 Adult Miwi -/ADH
31	GSM684624	9	22842725	Miwi CLIP	C57BL/6 adult testis
32	GSM684625	5	22842725	Miwi CLIP	C57BL/6 adult testis
34	GSM684627	4	22842725	Miwi CLIP	C57BL/6 adult testis
35	GSM684620	148	22842725	Mili CLIP	C57BL/6 adult testis
36	GSM684621	98	22842725	Mili CLIP	C57BL/6 adult testis
38	GSM684623	61	22842725	Mili CLIP	C57BL/6 adult testis
51	GSM610966	50	21602304	small RNA	Male germ cell, Pachytene spermatocytes
52	GSM610967	44	21602304	small RNA	Male germ cell, Round spermatids
59	GSM319955	2	18922463	small RNA	16.5 dpc testis
64	GSM319960	2	18922463	small RNA	10 dpp testis
65	GSM319961	2	18922463	small RNA	10 dpp MILI KO testis
66	GSM509275	13	20439430	small RNA	MitoPLD+/+ E16.5 testis
67	GSM509276	7	20439430	small RNA	MitoPLD-/- E16.5 testis
68	GSM509277	27	20439430	small RNA	Mili-/- E16.5 testis
69	GSM509278	4	20439430	small RNA	Miwi2-/- E16.5 testis
71	GSM509280	6	20439430	small RNA	MitoPLD-/- 10 dpp testis
79	N/A	1	22020280	Mili IP	Miwi2-/-_1 E16.5 fetal testis
114	GSM958035	3	22902560	Mili IP	Fkbp6 +/-,P0,testis
115	GSM958036	1	22902560	Mili IP	Fkbp6 -/-,P0,testis
118	GSM958039	2	22902560	Mili IP	Tdrd1 +/-,E18,testis
119	GSM958040	3	22902560	Mili IP	Tdrd1 -/-,E18,testis
132	GSM475279	512	20022248	Miwi IP	adult testis
133	GSM475280	5060	20022248	Mili IP	adult testis
217	GSM1653802	7	25582079	MIWI CLIP	round spermatids
225	GSM1528807	4059	26588211	small RNA	Adult testes Asb1 ao31(Het)
226	GSM1528808	1325	26588211	small RNA	Adult testes Asb1 ao32(KO)
227	GSM1528809	4225	26588211	small RNA	Adult testes Asb1 ao34(Het)
228	GSM1528810	2418	26588211	small RNA	Adult testes Asb1 ao36(KO)
234	GSM433288	534	26115953	small RNA	18dpp hetero tdrd6 KO testes
235	GSM433289	543	26115953	small RNA	18dpp homo tdrd6 KO testes
236	GSM433290	558	26115953	small RNA	25dpp hetero tdrd6 KO testes
237	GSM433291	418	26115953	small RNA	25dpp homo tdrd6 KO testes
345	GSM475279	512	20022248	Miwi-IP	testis
346	GSM475280	5060	20022248	Mili-IP	testis
347	GSM475281	315	20022248	small RNA	testis
441	GSM1096582	237	23523368	small RNA	Wild Type 10.5 dpp testes
443	GSM1096583	660	23523368	small RNA	Wild Type 12.5 dpp testes
444	GSM1096600	1354	23523368	oxidized small RNA	Wild Type 12.5 dpp testes
445	GSM1096584	1544	23523368	small RNA	Wild Type 14.5 dpp testes
446	GSM1096601	3207	23523368	oxidized small RNA	Wild Type 14.5 dpp testes
447	GSM1096585	255	23523368	small RNA	Wild Type 17.5 dpp testes
448	GSM1096602	771	23523368	oxidized small RNA	Wild Type 17.5 dpp testes
449	GSM1096586	774	23523368	small RNA	Wild Type 20.5 dpp testes
450	GSM1096603	1661	23523368	oxidized small RNA	Wild Type 20.5 dpp testes
451	GSM1096587	534	23523368	small RNA	Wild Type 6 weeks dpp testes
452	GSM1096604	905	23523368	oxidized small RNA	Wild Type 6 weeks dpp testes

5 best hit(s) with 0 mismatch(es) in GRCm38

No.	Location	Gene	RepeatMaker
Location 1	1:34602441-34602467:+
Location 2	10:85750626-85750652:+		SINE B4 B4;
Location 3	10:86589423-86589449:-		LINE L1 Lx3_Mus;
Location 4	17:66153313-66153339:-
Location 5	17:66208863-66208889:+		SINE B4 RSINE1;

PubMed	16751777	Journal	Nature. 2006 Jul 13;442(7099):203-7.
Title	A novel class of small RNAs bind to MILI protein in mouse testes
Authors	Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, Iovino N, Morris P, Brownstein MJ, Kuramochi-Miyagawa S, Nakano T, Chien M, Russo JJ, Ju J, Sheridan R, Sander C, Zavolan M, Tuschl T.

PubMed	16778019	Journal	Science. 2006 Jul 21;313(5785):363-7.
Title	Characterization of the piRNA complex from rat testes.
Authors	Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.

PubMed	22121019	Journal	Nature. 2011 Nov 27;480(7376):264-7.
Title	Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors	Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.

PubMed	22842725	Journal	Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title	Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors	Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.

PubMed	21602304	Journal	RNA. 2011 Jul;17(7):1191-203.
Title	piRNA profiling during specific stages of mouse spermatogenesis.
Authors	Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.

PubMed	18922463	Journal	Mol Cell. 2008 Sep 26;31(6):785-99.
Title	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Authors	Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

PubMed	20439430	Journal	Genes Dev. 2010 May;24(9):887-92.
Title	MVH in piRNA processing and gene silencing of retrotransposons.
Authors	Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.

PubMed	22020280	Journal	Nature. 2011 Oct 23;480(7376):259-63.
Title	The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements.
Authors	De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, Antony C, Moreira PN, Enright AJ, O'Carroll D.

PubMed	22902560	Journal	Mol Cell. 2012 Sep 28;47(6):970-9.
Title	A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.
Authors	Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS.

PubMed	20022248	Journal	Curr Biol. 2009 Dec 29;19(24):2066-76.
Title	A broadly conserved pathway generates 3'UTR-directed primary piRNAs.
Authors	Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

PubMed	25582079	Journal	Cell Res. 2015 Feb;25(2):193-207.
Title	MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors	Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.

PubMed	26588211	Journal	PLoS Genet. 2015 Nov 20;11(11):e1005652
Title	Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors	Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.

PubMed	26115953	Journal	Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors	Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ

PubMed	23523368	Journal	Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors	Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.