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Detail Information of piRNA: piR-mmu-10429

General Information
piRBase Id piR-mmu-10429 Accession AB251109
Organism Mouse Number of methods 5
Sequence TATTGAGAAGGATGCCGATTCTATGTCATC Number of papers 12
Length 30 Golden piRNA -
Aliases piR-8685; piR-103215; PIR189256; PIR196541; PIR29708; gsRNA139;
Datasets
Dataset Accession Reads PubMed Method Tissue
4 N/A N/A 16751776 small RNA testis
5 N/A N/A 16751777 MILI IP testis
6 GSM113695 4 16778019 Chromatography testes tissue from Swiss Webster male mice, 8-10 weeks old
10 N/A N/A 16766680 small RNA testis
11 GSM822760 6 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/+
12 GSM822758 5 22121019 Miwi IP Testes, C57BL/6 P14 Miwi +/+
13 GSM822759 5 22121019 Miwi IP Testes, C57BL/6 P20 Miwi +/+
14 GSM822761 8 22121019 Miwi IP Testes, C57BL/6 Adult Miwi +/ADH
15 GSM822762 4 22121019 Miwi IP Testes, C57BL/6 Adult Miwi -/ADH
31 GSM684624 41 22842725 Miwi CLIP C57BL/6 adult testis
32 GSM684625 10 22842725 Miwi CLIP C57BL/6 adult testis
33 GSM684626 7 22842725 Miwi CLIP C57BL/6 adult testis
34 GSM684627 17 22842725 Miwi CLIP C57BL/6 adult testis
35 GSM684620 7 22842725 Mili CLIP C57BL/6 adult testis
52 GSM610967 32 21602304 small RNA Male germ cell, Round spermatids
66 GSM509275 2 20439430 small RNA MitoPLD+/+ E16.5 testis
217 GSM1653802 245 25582079 MIWI CLIP round spermatids
225 GSM1528807 596 26588211 small RNA Adult testes Asb1 ao31(Het)
226 GSM1528808 678 26588211 small RNA Adult testes Asb1 ao32(KO)
227 GSM1528809 1189 26588211 small RNA Adult testes Asb1 ao34(Het)
228 GSM1528810 721 26588211 small RNA Adult testes Asb1 ao36(KO)
234 GSM433288 228 26115953 small RNA 18dpp hetero tdrd6 KO testes
235 GSM433289 51 26115953 small RNA 18dpp homo tdrd6 KO testes
236 GSM433290 516 26115953 small RNA 25dpp hetero tdrd6 KO testes
237 GSM433291 407 26115953 small RNA 25dpp homo tdrd6 KO testes
441 GSM1096582 5 23523368 small RNA Wild Type 10.5 dpp testes
444 GSM1096600 5 23523368 oxidized small RNA Wild Type 12.5 dpp testes
445 GSM1096584 7 23523368 small RNA Wild Type 14.5 dpp testes
446 GSM1096601 46 23523368 oxidized small RNA Wild Type 14.5 dpp testes
447 GSM1096585 31 23523368 small RNA Wild Type 17.5 dpp testes
448 GSM1096602 58 23523368 oxidized small RNA Wild Type 17.5 dpp testes
449 GSM1096586 58 23523368 small RNA Wild Type 20.5 dpp testes
450 GSM1096603 104 23523368 oxidized small RNA Wild Type 20.5 dpp testes
451 GSM1096587 137 23523368 small RNA Wild Type 6 weeks dpp testes
452 GSM1096604 240 23523368 oxidized small RNA Wild Type 6 weeks dpp testes
Location in GRCm38
1 best hit(s) with 0 mismatch(es) in GRCm38
No. Location Gene RepeatMaker
Location 1 7:69905726-69905756:-
piRNA Expression
Sample CPM
GSM400968 0
GSM400969 0
GSM433288 53.3951
GSM433289 11.1558
GSM433290 109.5849
GSM433291 144.781
GSM433292 274.4918
GSM433293 212.2652
GSM433294 0
GSM433295 0
GSM475279 0
GSM475280 0
GSM475281 0
GSM678422 0.0531
The Expression of piRNA: piR-mmu-10429
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751776 Journal Nature. 2006 Jul 13;442(7099):199-202.
Title A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
PubMed 16751777 Journal Nature. 2006 Jul 13;442(7099):203-7.
Title A novel class of small RNAs bind to MILI protein in mouse testes
Authors Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, Iovino N, Morris P, Brownstein MJ, Kuramochi-Miyagawa S, Nakano T, Chien M, Russo JJ, Ju J, Sheridan R, Sander C, Zavolan M, Tuschl T.
PubMed 16778019 Journal Science. 2006 Jul 21;313(5785):363-7.
Title Characterization of the piRNA complex from rat testes.
Authors Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE.
PubMed 16766680 Journal Genes Dev. 2006 Jul 1;20(13):1709-14.
Title A novel class of small RNAs in mouse spermatogenic cells.
Authors Grivna ST, Beyret E, Wang Z, Lin H.
PubMed 22121019 Journal Nature. 2011 Nov 27;480(7376):264-7.
Title Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Authors Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.
PubMed 22842725 Journal Nat Struct Mol Biol. 2012 Aug;19(8):773-81.
Title Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis.
Authors Vourekas A, Zheng Q, Alexiou P, Maragkakis M, Kirino Y, Gregory BD, Mourelatos Z.
PubMed 21602304 Journal RNA. 2011 Jul;17(7):1191-203.
Title piRNA profiling during specific stages of mouse spermatogenesis.
Authors Gan H, Lin X, Zhang Z, Zhang W, Liao S, Wang L, Han C.
PubMed 20439430 Journal Genes Dev. 2010 May;24(9):887-92.
Title MVH in piRNA processing and gene silencing of retrotransposons.
Authors Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatsu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T.
PubMed 25582079 Journal Cell Res. 2015 Feb;25(2):193-207.
Title MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes.
Authors Zhang P, Kang JY, Gou LT, Wang J, Xue Y, Skogerboe G, Dai P, Huang DW, Chen R, Fu XD, Liu MF, He S.
PubMed 26588211 Journal PLoS Genet. 2015 Nov 20;11(11):e1005652
Title Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
Authors Chirn GW,Rahman R,Sytnikova YA,Matts JA,Zeng M,Gerlach D,Yu M,Berger B,Naramura M, Kile BT,Lau NC.
PubMed 26115953 Journal Genes Dev. 2015 Jul 1; 29(13): 1403?415
Title RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Authors Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ
PubMed 23523368 Journal Mol Cell. 2013 Apr 11;50(1):67-81. doi: 10.1016/j.molcel.2013.02.016.
Title An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Authors Li XZ, Roy CK, Dong X, Bolcun-Filas E et al.