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Detail Information of piRNA: piR-hsa-34316

General Information
piRBase Id piR-hsa-34316 Accession N/A
Organism Human Number of methods 2
Sequence TTACTTGATGACAATAAAATATCTGATA Number of papers 1
Length 28 Golden piRNA Y
Aliases N/A
Datasets
Dataset Accession Reads PubMed Method Tissue
167 GSM1584521 5332 25818294 small RNA adult ovary
168 GSM1584522 5949 25818294 small RNA adult ovary
169 GSM1584523 173 25818294 oxidized small RNA adult ovary
170 GSM1584524 37 25818294 oxidized small RNA adult ovary
171 GSM1584525 548 25818294 small RNA ovary from 1st trimester embryos
172 GSM1584526 1005 25818294 small RNA ovary from 1st trimester embryos
173 GSM1584527 72 25818294 oxidized small RNA ovary from 1st trimester embryos
174 GSM1584528 6 25818294 oxidized small RNA ovary from 1st trimester embryos
175 GSM1584529 1261 25818294 small RNA ovary from 2nd trimester embryos
176 GSM1584530 3894 25818294 small RNA ovary from 2nd trimester embryos
177 GSM1584531 26 25818294 oxidized small RNA ovary from 2nd trimester embryos
178 GSM1584532 2 25818294 oxidized small RNA ovary from 2nd trimester embryos
Location in GRCh38
2 best hit(s) with 0 mismatch(es) in GRCh38
No. Location Gene RepeatMaker
Location 1 1:173864150-173864178:- GAS5 ENST00000651080; GAS5 ENST00000449289; GAS5 ENST00000430245; GAS5 ENST00000436656; GAS5 ENST00000431268; GAS5 ENST00000450589; GAS5 ENST00000412059; GAS5 ENST00000452197; GAS5 ENST00000456812; GAS5 ENST00000448718; GAS5 ENST00000436285; GAS5 ENST00000414075; GAS5 ENST00000422183; GAS5 ENST00000454813; GAS5 ENST00000422207; GAS5 ENST00000454068; GAS5 ENST00000650796; GAS5 ENST00000444470; GAS5 ENST00000434796; GAS5 ENST00000449589; GAS5 ENST00000451607;
Location 2 12:97876124-97876152:-
piRNA Expression
Sample CPM
GSM1584521 4791.9561
GSM1584522 4106.6812
GSM1584523 164.6595
GSM1584524 32.2646
GSM1584525 345.6497
GSM1584526 650.6973
Sample CPM
GSM1584527 103.5628
GSM1584528 638.7736
GSM1584529 560.8183
GSM1584530 1911.4649
GSM1584531 3.1927
GSM1584532 2.509
The Expression of piRNA: piR-hsa-34316
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 25818294 Journal Cell Rep. 2015 Mar 31;10(12):2069-82.
Title Piwi proteins and piRNAs in mammalian oocytes and early embryos.
Authors Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van der Westerlaken LA, Zischler H, Butter F, Roelen BA, Ketting RF.