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Detail Information of piRNA: piR-hsa-3084

General Information
piRBase Id piR-hsa-3084 Accession DQ572760
Organism Human Number of methods 2
Sequence TCAAGGCCATTGTGGACCTGACAGGGC Number of papers 2
Length 27 Golden piRNA Y
Aliases piR-40872; PIR33871;
Datasets
Dataset Accession Reads PubMed Method Tissue
1 N/A N/A 16751776 small RNA testis
169 GSM1584523 2 25818294 oxidized small RNA adult ovary
170 GSM1584524 1 25818294 oxidized small RNA adult ovary
175 GSM1584529 1 25818294 small RNA ovary from 2nd trimester embryos
177 GSM1584531 11 25818294 oxidized small RNA ovary from 2nd trimester embryos
178 GSM1584532 1 25818294 oxidized small RNA ovary from 2nd trimester embryos
Location in GRCh38
1 best hit(s) with 0 mismatch(es) in GRCh38
No. Location Gene RepeatMaker
Location 1 9:136925869-136925896:+ TRAF2 ENST00000247668;
piRNA Expression
Sample CPM
GSM1584521 0
GSM1584522 0
GSM1584523 1.9036
GSM1584524 0.872
GSM1584525 0
GSM1584526 0
Sample CPM
GSM1584527 0
GSM1584528 0
GSM1584529 0.4447
GSM1584530 0
GSM1584531 1.3508
GSM1584532 1.2545
The Expression of piRNA: piR-hsa-3084
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751776 Journal Nature. 2006 Jul 13;442(7099):199-202.
Title A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
PubMed 25818294 Journal Cell Rep. 2015 Mar 31;10(12):2069-82.
Title Piwi proteins and piRNAs in mammalian oocytes and early embryos.
Authors Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van der Westerlaken LA, Zischler H, Butter F, Roelen BA, Ketting RF.