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Detail Information of piRNA: piR-hsa-30753

General Information
piRBase Id piR-hsa-30753 Accession DQ600553
Organism Human Number of methods 2
Sequence TACTCTTTGTTGGGCCTGAACTCGTGCTT Number of papers 3
Length 29 Golden piRNA Y
Aliases piR-38619; PIR61664;
Datasets
Dataset Accession Reads PubMed Method Tissue
1 N/A N/A 16751776 small RNA testis
170 GSM1584524 3 25818294 oxidized small RNA adult ovary
175 GSM1584529 27 25818294 small RNA ovary from 2nd trimester embryos
176 GSM1584530 43 25818294 small RNA ovary from 2nd trimester embryos
177 GSM1584531 439 25818294 oxidized small RNA ovary from 2nd trimester embryos
178 GSM1584532 34 25818294 oxidized small RNA ovary from 2nd trimester embryos
270 GSM3517639 N/A 31358756 samll RNA(CAS-seq) oocyte(age: adult)
274 GSM3517644 N/A 31358756 samll RNA(CAS-seq) 2 cell embryo(age: adult; spike in)
286 GSM3517671 N/A 31358756 oxidized small RNA oocyte(age: adult; spike in)
Location in GRCh38
1 best hit(s) with 0 mismatch(es) in GRCh38
No. Location Gene RepeatMaker
Location 1 4:10117425-10117454:+
piRNA Expression
Sample CPM
GSM1584521 0
GSM1584522 0
GSM1584523 0
GSM1584524 2.6161
GSM1584525 0
GSM1584526 0
Sample CPM
GSM1584527 0
GSM1584528 0
GSM1584529 12.008
GSM1584530 21.1076
GSM1584531 53.9076
GSM1584532 42.6529
The Expression of piRNA: piR-hsa-30753
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P value calculation
Sample1
Sample2
Target mRNA
No record.
Target lncRNA
No record.
Target Network
No record.
Disease Information
No record.
Reference
PubMed 16751776 Journal Nature. 2006 Jul 13;442(7099):199-202.
Title A germline-specific class of small RNAs binds mammalian Piwi proteins
Authors Girard A, Sachidanandam R, Hannon GJ, Carmell MA.
PubMed 25818294 Journal Cell Rep. 2015 Mar 31;10(12):2069-82.
Title Piwi proteins and piRNAs in mammalian oocytes and early embryos.
Authors Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van der Westerlaken LA, Zischler H, Butter F, Roelen BA, Ketting RF.
PubMed 31358756 Journal Nat Commun. 2019 Jul 29;10(1):3389. doi: 10.1038/s41467-019-11312-8.
Title Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes.
Authors Yang Q, Li R, Lyu Q, Hou L, Liu Z, Sun Q, Liu M, Shi H, Xu B, Yin M, Yan Z,Huang Y, Liu M, Li Y, Wu L.