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Detail Information of piRNA: piR-hsa-1948385

General Information

piRBase Id	piR-hsa-1948385	Accession	N/A
Organism	Human	Number of methods	2
Sequence	AAGATTTCCGTGGAGAGGAACGAGT	Number of papers	1
Length	25	Golden piRNA	-
Aliases	N/A

Datasets

Dataset	Accession	Reads	PubMed	Method	Tissue
171	GSM1584525	1	25818294	small RNA	ovary from 1st trimester embryos
172	GSM1584526	1	25818294	small RNA	ovary from 1st trimester embryos
173	GSM1584527	1	25818294	oxidized small RNA	ovary from 1st trimester embryos

Location in GRCh38

1 best hit(s) with 1 mismatch(es) in GRCh38

No.	Location	Gene	RepeatMaker
Location 1	1:11908198-11908223:+	ENSG00000285646 ENST00000661075; ENSG00000285646 ENST00000649268; ENSG00000285646 ENST00000650448; ENSG00000285646 ENST00000666735; ENSG00000285646 ENST00000660618; ENSG00000285646 ENST00000658167; RNU5E-1 ENST00000362477;	snRNA snRNA U5;

piRNA Expression

Sample	CPM
GSM1584521	0
GSM1584522	0
GSM1584523	0
GSM1584524	0
GSM1584525	0.6307
GSM1584526	0.6475

Sample	CPM
GSM1584527	1.4384
GSM1584528	0
GSM1584529	0
GSM1584530	0
GSM1584531	0
GSM1584532	0

The Expression of piRNA: piR-hsa-1948385

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P value calculation

Sample1

Sample2

Target mRNA

No record.

Target lncRNA

No record.

Target Network

No record.

Disease Information

No record.

Reference

PubMed	25818294	Journal	Cell Rep. 2015 Mar 31;10(12):2069-82.
Title	Piwi proteins and piRNAs in mammalian oocytes and early embryos.
Authors	Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van der Westerlaken LA, Zischler H, Butter F, Roelen BA, Ketting RF.