Interaction Profile
Interaction ID
ncRI-41000511
Interaction Molecules
Mir6236 -- Nfix
Interaction Level
RNA-RNA
Interaction Class
binding
Data Source
RISE database
Tags
Organism
Mus musculus
Tissue or Cell Type
mES
Experiment
PARIS
Description
RNA-RNA interaction from RISE database
Molecule Profile
Alias
-
Class
mRNA
Ensembl id
ENSMUSG00000001911
Description
Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. Isoform NFIX1 acts as a transcriptional activator while isoform NFIX3 acts as a repressor.
Reference Information
| Pubmed ID | 27180905 | Journal | Cell |
|---|---|---|---|
| Title | RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure. | ||
| Author | Lu Z, Zhang QC, Lee B, Flynn RA, Smith MA, Robinson JT, Davidovich C, Gooding AR, Goodrich KJ, Mattick JS, Mesirov JP, Cech TR, Chang HY | ||
Network View