Interaction Profile
Interaction ID
ncRI-40166918
Interaction Molecules
TRIM33 -- hnRNPA2B1
Interaction Level
RNA-Protein
Interaction Class
binding
Data Source
High-throughput data
Tags
Organism
Homo sapiens
Tissue or Cell Type
MDA-MB-231
Experiment
HITS-CLIP
Description
Nuclear HNRNPA2B1 HITS-CLIP.
Molecule Profile
Alias
-
Class
protein
UniProt id
Description
Involved with pre-mRNA processing. Forms complexes (ribonucleosomes) with at least 20 other different hnRNP and heterogeneous nuclear RNA in the nucleus (By similarity).
Binding Sites
| Binding Site ID | Location | Conservation Score |
|---|---|---|
| 3946573 | chr1:114939012-114939027 | 1.0 |
| 3946577 | chr1:114939027-114939036 | 0.998111111111 |
| 3946580 | chr1:114939036-114939048 | 0.967916666667 |
| 3946582 | chr1:114939048-114939051 | 1.0 |
| 3946584 | chr1:114939051-114939053 | 1.0 |
| 3946585 | chr1:114939053-114939056 | 1.0 |
| 3946587 | chr1:114939056-114939058 | 1.0 |
| 3946588 | chr1:114939058-114939065 | 1.0 |
| 3946589 | chr1:114939065-114939076 | 0.996363636364 |
| 3946591 | chr1:114939076-114939078 | 0.9995 |
| 3946593 | chr1:114939078-114939084 | 1.0 |
| 3946618 | chr1:114939435-114939457 | 0.977272727273 |
| 3946631 | chr1:114939585-114939611 | 0.103115384615 |
| 3946632 | chr1:114939611-114939641 | 0.00793333333333 |
| 3946637 | chr1:114939641-114939666 | 0.00532 |
| 3946652 | chr1:114939967-114939985 | 0.591666666667 |
| 3946653 | chr1:114939986-114939997 | 0.864 |
| 3946656 | chr1:114940004-114940009 | 0.0914 |
| 3946657 | chr1:114940009-114940011 | 0.998 |
| 3946658 | chr1:114940011-114940013 | 1.0 |
| 3946659 | chr1:114940013-114940022 | 0.685555555556 |
| 3946660 | chr1:114940022-114940025 | 0.048 |
| 3946661 | chr1:114940025-114940027 | 0.2015 |
| 3946662 | chr1:114940027-114940032 | 0.3386 |
| 3946663 | chr1:114940032-114940039 | 0.0475714285714 |
| 3946664 | chr1:114940039-114940058 | 0.595947368421 |
| 3946665 | chr1:114940058-114940062 | 0.67075 |
| 3946673 | chr1:114940266-114940273 | 0.997714285714 |
| 3946674 | chr1:114940273-114940288 | 1.0 |
| 3946676 | chr1:114940301-114940307 | 1.0 |
| 3946677 | chr1:114940307-114940331 | 1.0 |
| 3946678 | chr1:114940331-114940332 | 1.0 |
| 3946679 | chr1:114940332-114940333 | 1.0 |
| 3946680 | chr1:114940333-114940338 | 0.9998 |
| 3946681 | chr1:114940338-114940347 | 1.0 |
| 3946683 | chr1:114940347-114940351 | 0.99975 |
| 3946684 | chr1:114940351-114940357 | 1.0 |
| 3946685 | chr1:114940357-114940367 | 1.0 |
| 3946686 | chr1:114940367-114940378 | 0.999272727273 |
| 3946688 | chr1:114940417-114940452 | 0.999685714286 |
| 3946691 | chr1:114940452-114940472 | 1.0 |
| 3946692 | chr1:114940472-114940478 | 0.999666666667 |
| 3946694 | chr1:114940702-114940708 | 1.0 |
| 3946695 | chr1:114940708-114940719 | 0.999090909091 |
| 3946697 | chr1:114940719-114940732 | 0.992769230769 |
| 3946699 | chr1:114940853-114940873 | 0.0023 |
| 3946700 | chr1:114941022-114941033 | 0.00618181818182 |
| 3946702 | chr1:114941332-114941341 | 0.292222222222 |
| 3946703 | chr1:114941341-114941346 | 0.001 |
| 3946704 | chr1:114941378-114941383 | 0.0052 |
| 3946706 | chr1:114941387-114941408 | 0.513428571429 |
| 3946708 | chr1:114941669-114941691 | 0.247636363636 |
| 3946709 | chr1:114941738-114941743 | 0.0042 |
| 3946710 | chr1:114941743-114941744 | 0.0 |
| 3946711 | chr1:114941745-114941758 | 0.0150769230769 |
| 3946712 | chr1:114941793-114941802 | 0.00388888888889 |
| 3946713 | chr1:114941802-114941812 | 0.0341 |
| 3946714 | chr1:114941812-114941813 | 0.001 |
| 3946715 | chr1:114941813-114941818 | 0.0028 |
| 3946716 | chr1:114941818-114941821 | 0.00666666666667 |
| 3946717 | chr1:114941821-114941832 | 0.0124545454545 |
| 3946721 | chr1:115002625-115002647 | 1.0 |
Network View