SmProt

Specific Information of Small Protein : SPROHSA52302

General Information

Small Protein ID	SPROHSA52302
Organism	Human (Homo sapiens)
Small Protein Sequence	TENEGVQLWPSQSSGGDETHLPLSLWARLMPGASVDRGHAPGLPKLERAARLRSEGQNSTVSPTESRWEQGR*
RNA Sequence	ACGGAAAATGAGGGAGTTCAACTCTGGCCCTCACAATCCAGTGGAGGAGACGAAACTCATCTGCCTCTGTCCCTCTGGGCACGCCTCATGCCAGGTGCATCTGTGGACAGGGGCCATGCCCCTGGGCTTCCAAAGTTGGAGAGAGCTGCCAGGCTCAGGTCTGAAGGCCAGAATTCTACAGTAAGTCCTACTGAGTCAAGGTGGGAGCAGGGTCGGTAG
Protein Length	72
Start Codon	ACG
Location	chr1:169203-173778:-
Blocks	169203-169264,172556-172688,173752-173778
Mean PhyloCSF	0
Data Source	Ribosome profiling;
Related Genes	ENSG00000241860; AL627309.5; NONHSAG000008;NONHSAG000012;
Mass (Da)	mono. 7858.9; avg. 7863.5

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE94613_2_alt	ENSG00000241860.7	ENST00000466557.6	AL627309.5	LncRNA	Novel	0.011414	None	84	303	7	6.65108609

Min Ribo P value	0.011414
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE94613_2_alt	MOLM13	Acute myeloid leukemia	GSM2481053	29186125;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
1-172572-C-T	Non-Synonymous p.R48K	.	SRR5047771; SRR5047772; SRR1795425; SRR1795427

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA380728	27	TTG	-	169203-169264, 172556-172579
SPROHSA159551	99	ATG	-	169203-169264, 172556-172688, 173752-173859