SmProt

Specific Information of Small Protein : SPROHSA159551

General Information

Small Protein ID	SPROHSA159551
Organism	Human (Homo sapiens)
Small Protein Sequence	MIIPHLLRDKDQRATTATSPRTCQCWGTENEGVQLWPSQSSGGDETHLPLSLWARLMPGASVDRGHAPGLPKLERAARLRSEGQNSTVSPTESRWEQGR*
RNA Sequence	ATGATTATTCCCCACCTTCTAAGAGACAAAGACCAACGAGCCACCACAGCCACCAGTCCCAGAACCTGCCAATGCTGGGGAACGGAAAATGAGGGAGTTCAACTCTGGCCCTCACAATCCAGTGGAGGAGACGAAACTCATCTGCCTCTGTCCCTCTGGGCACGCCTCATGCCAGGTGCATCTGTGGACAGGGGCCATGCCCCTGGGCTTCCAAAGTTGGAGAGAGCTGCCAGGCTCAGGTCTGAAGGCCAGAATTCTACAGTAAGTCCTACTGAGTCAAGGTGGGAGCAGGGTCGGTAG
Protein Length	99
Start Codon	ATG
Location	chr1:169203-173859:-
Blocks	169203-169264,172556-172688,173752-173859
Mean PhyloCSF	0
Data Source	Ribosome profiling;
Related Genes	ENSG00000241860; AL627309.5; NONHSAG000008;NONHSAG000012;
Mass (Da)	mono. 10938.4; avg. 10945.1

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR5047771	ENSG00000241860.7	ENST00000466557.6	AL627309.5	LncRNA	Novel	0.049007	None	3	303	13	1.98172885
GSE94613_2	ENSG00000241860.7	ENST00000466557.6	AL627309.5	LncRNA	Novel	0.011664	None	3	303	7	4.85529285

Min Ribo P value	0.011664
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE94613_2	MOLM13	Acute myeloid leukemia	GSM2481053	29186125;
SRR5047771	iPSC-differentiated dopamine neurons	Parkinson Disease	NA	NA;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
1-172572-C-T	Non-Synonymous p.R75K	.	SRR5047771; SRR5047772; SRR1795425; SRR1795427

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA380728	27	TTG	-	169203-169264, 172556-172579
SPROHSA52302	72	ACG	-	169203-169264, 172556-172688, 173752-173778