Specific Information of Small Protein : SPROHSA364811
General Information
Small Protein IDSPROHSA364811
OrganismHuman (Homo sapiens)
Small Protein SequenceVCQVTEAPESAPALLASRHDPPLPMGPSVCAPSPGD*
RNA SequenceGTGTGTCAAGTTACAGAGGCGCCGGAATCGGCCCCTGCGCTCCTCGCCAGCCGCCACGACCCACCTCTGCCCATGGGGCCCTCCGTGTGCGCCCCTTCGCCCGGGGACTGA
Protein Length36
Start CodonGTG
Locationchr10:69801929-69802040:+
Blocks69801929-69802040
Mean PhyloCSF-3.99521620854
Data SourceRibosome profiling;
Related GenesENSG00000197467; COL13A1;
Mass (Da)mono. 3595.7; avg. 3598
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
GSE45833_2_altENSG00000197467.14ENST00000645393.1COL13A1Protein_coding5'UTR0.026281None6317478.65986193
Min Ribo P value0.026281
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE45833_2_altBJ cellsQuiescenceGSM1047586; GSM104758723594524;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
10-69802009-C-ANon-Synonymous p.P27H.SRR5350744
10-69802014-G-ANon-Synonymous p.V29Mrs2704505SRR2818787; SRR2818791; SRR5350744; SRR627622; SRR627626; SRR627627; SRR810100; SRR810101; SRR810102; SRR810103; SRR810104
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA20510112ATG+69802001-69802040