Specific Information of Small Protein : SPROHSA34580
General Information
| Small Protein ID | SPROHSA34580 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | KGGNFGGRSSGPHGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF* |
| RNA Sequence | AAGGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCCATGGTGGTGGAGGCCAGTACTTTGCAAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGATTTTAA |
| Protein Length | 44 |
| Start Codon | AAG |
| Location | chr8:82291623-82291758:- |
| Blocks | 82291623-82291758 |
| Mean PhyloCSF | 0 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000254394; AC060765.2; ENSG00000206228; HNRNPA1P4; NONHSAG099581; |
| Mass (Da) | mono. 4354; avg. 4356.5 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR3317843_alt | ENSG00000206228.4 | ENST00000509706.1 | HNRNPA1P4 | Processed_pseudogene | Novel | 0.017214 | None | 621 | 756 | 18 | 112.207471 |
| SRR5047770_alt | ENSG00000206228.4 | ENST00000509706.1 | HNRNPA1P4 | Processed_pseudogene | Novel | 0.031037 | None | 621 | 756 | 47 | 27.6221417 |
| GSE94613_2_alt | ENSG00000206228.4 | ENST00000509706.1 | HNRNPA1P4 | Processed_pseudogene | Novel | 0.00941 | None | 621 | 756 | 19 | 29.2858933 |
| GSE104033_alt | ENSG00000206228.4 | ENST00000509706.1 | HNRNPA1P4 | Processed_pseudogene | Novel | 0.045093 | None | 621 | 756 | 16 | 59.9536120 |
| SRR4045277_alt | ENSG00000206228.4 | ENST00000509706.1 | HNRNPA1P4 | Processed_pseudogene | Novel | 0.018995 | None | 621 | 756 | 7 | 157.214959 |
| Min Ribo P value | 0.00941 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE104033_alt | HAP-1 cells | Chronic myeloid leukemia | GSM2788007; GSM2788008 | 30143613; |
| GSE94613_2_alt | MOLM13 | Acute myeloid leukemia | GSM2481053 | 29186125; |
| SRR3317843_alt | U2OS cells | WT | GSM2103080 | 27406171; |
| SRR4045277_alt | platelet-like particles | WT | GSM2285910 | 27681415; |
| SRR5047770_alt | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 44 | - | T | | | | |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | T | | | | |
| Disease | Detected |
|---|
| Acute myeloid leukemia | Predicted by Ribo-seq |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA142715 | 45 | ATG | - | 82291623-82291761 |
SmProt