Specific Information of Small Protein : SPROHSA334223
General Information
Small Protein IDSPROHSA334223
OrganismHuman (Homo sapiens)
Small Protein SequenceVPGAGQFSHQSGDW*
RNA SequenceGTGCCTGGAGCTGGGCAGTTTTCTCATCAGAGTGGGGACTGGTAA
Protein Length14
Start CodonGTG
Locationchr1:778554-778599:-
Blocks778554-778599
Mean PhyloCSF0
Data SourceRibosome profiling;
Related GenesENSG00000230021; AL669831.3; ENSG00000228327; AL669831.1; NONHSAG000046;NONHSAG056042;NONHSAG000041;
Mass (Da)mono. 1471.6; avg. 1472.5
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
GSE58207_altENSG00000228327.3ENST00000506640.2AL669831.1Transcribed_unprocessed_pseudogeneNovel0.0320650.002989277236.86576775
Min Ribo P value0.032065
Min TIS P value0.002989
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE58207_altHCT116Colorectal carcinomaGSM1403307; GSM140330825510491;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA20941715ATG-778554-778602