Specific Information of Small Protein : SPROHSA317660
General Information
| Small Protein ID | SPROHSA317660 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LFPSASAALPFSGAQLWSFHPARQRGEGARAASG* |
| RNA Sequence | CTGTTTCCCTCTGCGTCCGCGGCCCTGCCCTTTTCGGGGGCACAGCTGTGGTCTTTCCACCCCGCGAGACAGCGGGGCGAGGGGGCGCGGGCGGCCAGTGGATAG |
| Protein Length | 34 |
| Start Codon | CTG |
| Location | chr1:11680802-11680907:- |
| Blocks | 11680802-11680907 |
| Mean PhyloCSF | -6.68938094775 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000116670; MAD2L2; |
| Mass (Da) | mono. 3497.8; avg. 3499.8 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE65778 | ENSG00000116670.15 | ENST00000456915.1 | MAD2L2 | Protein_coding | 5'UTR | 0.007896 | None | 224 | 329 | 20 | 33.4019384 |
| SRR5047770_alt | ENSG00000116670.15 | ENST00000456915.1 | MAD2L2 | Protein_coding | 5'UTR | 0.026136 | None | 224 | 329 | 7 | 5.28934628 |
| Min Ribo P value | 0.007896 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE65778 | HEK293T | WT | GSM1606107; GSM1606108 | 25719440; |
| SRR5047770_alt | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA215407 | 46 | ATG | - | 11680802-11680943 |
SmProt