Specific Information of Small Protein : SPROHSA310809
General Information
| Small Protein ID | SPROHSA310809 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LSSPLTSYLSHTVPQAPDGEITAPWPSSWQALHLAFTSSTRNTCSPSSWAAERTESSWRGWRPVSLS* |
| RNA Sequence | CTGTCCAGCCCCCTCACCTCATATCTCAGCCATACAGTCCCGCAGGCTCCCGATGGCGAGATTACGGCGCCCTGGCCATCATCATGGCAGGCATTGCATTTGGCTTTCACCAGCTCTACAAGAAATACCTGCTCCCCCTCATCCTGGGCGGCCGAGAGGACAGAAAGCAGCTGGAGAGGATGGAGGCCGGTCTCTCTGAGCTGA |
| Protein Length | 67 |
| Start Codon | CTG |
| Location | chr1:10599330-10623100:+ |
| Blocks | 10599330-10599366,10618331-10618417,10623018-10623100 |
| Mean PhyloCSF | -7.00292646797 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000142655; PEX14; ENSG00000287727; AL139423.2; ENSG00000243267; RN7SL614P; NONHSAG056126;NONHSAG057493;NONHSAG057495;NONHSAG000347;NONHSAG056127;NONHSAG057496; |
| Mass (Da) | mono. 7354.6; avg. 7359 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45785_3_alt | ENSG00000142655.13 | ENST00000491661.2 | PEX14 | Protein_coding | Internal | 0.00591 | None | 247 | 451 | 19 | 39.2801553 |
| GSE45785_3_alt | ENSG00000142655.13 | ENST00000356607.9 | PEX14 | Protein_coding | Internal | 0.00591 | None | 279 | 483 | 19 | 39.2801553 |
| Min Ribo P value | 0.00591 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE45785_3_alt | BJ cells | Immortalized | GSM1115210 | 23594524; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA152829 | 80 | ATG | + | 10599291-10599366, 10618331-10618417, 10623018-10623100 |
SmProt