Specific Information of Small Protein : SPROHSA152829
General Information
| Small Protein ID | SPROHSA152829 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MSLRPWAQPHRWFLSSPLTSYLSHTVPQAPDGEITAPWPSSWQALHLAFTSSTRNTCSPSSWAAERTESSWRGWRPVSLS* |
| RNA Sequence | ATGAGCCTTCGTCCTTGGGCCCAGCCACACAGGTGGTTCCTGTCCAGCCCCCTCACCTCATATCTCAGCCATACAGTCCCGCAGGCTCCCGATGGCGAGATTACGGCGCCCTGGCCATCATCATGGCAGGCATTGCATTTGGCTTTCACCAGCTCTACAAGAAATACCTGCTCCCCCTCATCCTGGGCGGCCGAGAGGACAGAAAGCAGCTGGAGAGGATGGAGGCCGGTCTCTCTGAGCTGA |
| Protein Length | 80 |
| Start Codon | ATG |
| Location | chr1:10599291-10623100:+ |
| Blocks | 10599291-10599366,10618331-10618417,10623018-10623100 |
| Mean PhyloCSF | -6.26018519103 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000142655; PEX14; ENSG00000287727; AL139423.2; ENSG00000243267; RN7SL614P; NONHSAG056126;NONHSAG057493;NONHSAG057495;NONHSAG000347;NONHSAG056127;NONHSAG057496; |
| Mass (Da) | mono. 9047.4; avg. 9053 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45785_3 | ENSG00000142655.13 | ENST00000491661.2 | PEX14 | Protein_coding | Internal | 0.0061 | None | 208 | 451 | 19 | 32.9759328 |
| GSE45785_3 | ENSG00000142655.13 | ENST00000356607.9 | PEX14 | Protein_coding | Internal | 0.0061 | None | 240 | 483 | 19 | 32.9759328 |
| Min Ribo P value | 0.0061 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE45785_3 | BJ cells | Immortalized | GSM1115210 | 23594524; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA310809 | 67 | CTG | + | 10599330-10599366, 10618331-10618417, 10623018-10623100 |
SmProt