Specific Information of Small Protein : SPROHSA257642
General Information
| Small Protein ID | SPROHSA257642 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LRGPSHWRGRGRRPSPLPGLSQKGKRAKPASLAWLPHWGDWWVVTPPYPHPWKPGGRVPPEETWIFARKREIQLSSVSRKLSSSSS* |
| RNA Sequence | CTGAGAGGTCCTTCCCATTGGAGGGGCAGGGGGAGGAGACCCAGCCCACTCCCCGGCCTTAGCCAGAAAGGCAAGAGAGCAAAGCCAGCGTCTCTAGCTTGGTTGCCACACTGGGGAGACTGGTGGGTGGTCACCCCACCCTACCCTCATCCATGGAAACCCGGAGGGAGAGTCCCGCCTGAAGAAACCTGGATCTTTGCTAGAAAGAGAGAGATCCAGTTGTCATCGGTATCCAGGAAGCTCTCCTCTTCCTCCTCCTGA |
| Protein Length | 86 |
| Start Codon | CTG |
| Location | chr1:203627008-203682791:+ |
| Blocks | 203627008-203627219,203682741-203682791 |
| Mean PhyloCSF | -5.37466326251 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000058668; ATP2B4; ENSG00000236035; AL513343.1; NONHSAG003999;NONHSAG057114;NONHSAG105657; |
| Mass (Da) | mono. 9792.2; avg. 9798.1 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR618770,618771,618772,618773_alt | ENSG00000058668.14 | ENST00000367218.7 | ATP2B4 | Protein_coding | 5'UTR | 0.008779 | 6.304E-05 | 222 | 483 | 13 | 8.40852951 |
| SRR618770,618771,618772,618773_alt | ENSG00000058668.14 | ENST00000357681.9 | ATP2B4 | Protein_coding | 5'UTR | 0.008779 | 6.304E-05 | 448 | 709 | 13 | 8.40852951 |
| Min Ribo P value | 0.008779 |
| Min TIS P value | 6.304E-05 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | T | | | | |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 1-203627152-C-T | Synonymous p.Y48Y | rs76857273 | SRR5047771 |
| 1-203627190-A-G | Non-Synonymous p.E61G | rs4600103 | SRR3208885; SRR3208921; SRR4045276; SRR5047770; SRR5047771; SRR5047772; SRR5239056; SRR5239058; SRR5350745; SRR5382423; SRR6053333; SRR7207252; SRR8907185; SRR8907187; SRR8310196; SRR8310197; SRR8310201; SRR8310198; SRR8310199; SRR8310200; SRR8310205; SRR627622; SRR627623; SRR627625; SRR627626; SRR627627; SRR810100; SRR810101; SRR810102; SRR810103; SRR810104; SRR1795425; SRR964946 |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA136001 | 22 | ATC | + | 203627200-203627219, 203682741-203682791 |
SmProt