SmProt

Specific Information of Small Protein : SPROHSA235490

General Information

Small Protein ID	SPROHSA235490
Organism	Human (Homo sapiens)
Small Protein Sequence	ILGGLGLAALRSRPPAWIRSRAFWREGSEGAPTLRRTERRRQRPWAKRAPLRRPAGTWELKRNLLKSERRIWNG*
RNA Sequence	ATTCTGGGAGGTTTGGGCCTGGCGGCTCTCCGTTCCCGACCCCCGGCGTGGATTCGTTCCCGCGCTTTCTGGCGTGAGGGGTCAGAGGGCGCGCCGACGCTCAGGCGAACGGAGCGGAGGCGGCAGCGGCCATGGGCGAAGCGGGCGCCGCTGAGGAGGCCTGCCGGCACATGGGAACTAAAGAGGAATTTGTTAAAGTCAGAAAGAAGGATCTGGAACGGCTGA
Protein Length	74
Start Codon	ATT
Location	chr21:43656679-43658227:-
Blocks	43656679-43656737,43658060-43658227
Mean PhyloCSF	-7.86741778692
Data Source	Ribosome profiling;
Related Genes	ENSG00000160207; HSF2BP;
Mass (Da)	mono. 8692.9; avg. 8698

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE94454_alt	ENSG00000160207.9	ENST00000443485.1	HSF2BP	Protein_coding	5'UTR	0.036048	None	178	403	4	0.79138999
GSE94454_alt	ENSG00000160207.9	ENST00000291560.7	HSF2BP	Protein_coding	5'UTR	0.036048	None	196	421	4	0.79138999

Min Ribo P value	0.036048
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE94454_alt	Huh7	Hepatoma	GSM2476003; GSM2476004; GSM2476005	28323820;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
21-43658154-C-T	Non-Synonymous p.R25H	rs2838343	SRR5382423; SRR6053333; SRR3680966; SRR3680967; SRR618771; SRR618773

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA234589	57	ATT	-	43656679-43656737, 43658060-43658176