Specific Information of Small Protein : SPROHSA216137
General Information
Small Protein IDSPROHSA216137
OrganismHuman (Homo sapiens)
Small Protein SequenceMSRPNSPRGLGVVLSAHARKPGPDAAVRRTSRRVRLNAASCQAARDALSLRRLLAS*
RNA SequenceATGTCGCGGCCGAACTCACCTCGTGGCCTCGGCGTGGTGCTCTCAGCTCATGCCCGGAAACCAGGTCCCGACGCCGCGGTCAGACGGACCTCTAGACGCGTCCGCCTCAATGCCGCCAGCTGCCAGGCCGCCCGTGACGCGTTAAGCCTGCGCCGCCTCCTGGCTTCGTGA
Protein Length56
Start CodonATG
Locationchr9:122264695-122264866:+
Blocks122264695-122264866
Mean PhyloCSF-5.71631574056
Data SourceRibosome profiling; Literature;
Related GenesENSG00000148187; MRRF; ENSG00000119446; RBM18;
Mass (Da)mono. 5988.3; avg. 5991.9
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
GSE105082ENSG00000148187.18ENST00000297908.7MRRFProtein_coding5'UTR0.035009None9326451.98698325
GSE105082_altENSG00000148187.18ENST00000297908.7MRRFProtein_coding5'UTR0.035009None9326451.98698325
GSE83493ENSG00000148187.18ENST00000297908.7MRRFProtein_coding5'UTR0.023908None93264139.11070144
SRR964946_altENSG00000148187.18ENST00000297908.7MRRFProtein_coding5'UTR0.0271680.00651793264NANA
Min Ribo P value0.023908
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE105082HELACervical cancerGSM2817679; GSM281768030591072;
GSE105082_altHELACervical cancerGSM2817679; GSM281768030591072;
GSE83493HeLa S3Cervical cancerGSM2204389; GSM2204390; GSM2204391; GSM220439228460002;
SRR964946_altHEK293WTSRR96494622927429;

Database information
No results
Literature information
PMID26687005;
Cell lines Or TissuesBJ
PhenotypeNULL
Gene IDENSG00000148187
Transcript IDENST00000546115
SymbolNA
ORF TypesORF
Gene Typeprotein_coding
ThroughputHigh-throughput Literature Mining
InteractionNA
Function DescriptionNA
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
9-122264840-A-CNon-Synonymous p.S49Rrs7035313SRR3680969
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA33742344GTG+122264731-122264866