Specific Information of Small Protein : SPROHSA200500
General Information
| Small Protein ID | SPROHSA200500 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MGKLSRCSSLRNLDLRSVCEWYSVKRT |
| RNA Sequence | ATGGGAAAATTAAGCAGATGCTCCAGTTTGAGAAACCTGGATCTGCGATCTGTTTGTGAGTGGTATTCAGTTAAGAGAACA |
| Protein Length | 27 |
| Start Codon | ATG |
| Location | chr14:58285733-58291692:- |
| Blocks | 58285733-58285756,58291634-58291692 |
| Mean PhyloCSF | -6.34445680218 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000279636; AL132989.2; NONHSAG015097;NONHSAG015108;NONHSAG068810; |
| Mass (Da) | mono. 3186.6; avg. 3188.7 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR5047771 | ENSG00000257621.8 | ENST00000551597.6 | PSMA3-AS1 | LncRNA | Novel | 0.047286 | None | 424 | 505 | 36 | 20.3254241 |
| SRR7207252 | ENSG00000257621.8 | ENST00000551597.6 | PSMA3-AS1 | LncRNA | Novel | 0.031481 | None | 424 | 505 | 17 | 55.5026174 |
| SRR7207252_alt | ENSG00000257621.8 | ENST00000551597.6 | PSMA3-AS1 | LncRNA | Novel | 0.031481 | None | 424 | 505 | 17 | 55.5026174 |
| GSE83493 | ENSG00000257621.8 | ENST00000551597.6 | PSMA3-AS1 | LncRNA | Novel | 0.009893 | None | 424 | 505 | 15 | 22.1927342 |
| GSE83493_alt | ENSG00000257621.8 | ENST00000551597.6 | PSMA3-AS1 | LncRNA | Novel | 0.009893 | None | 424 | 505 | 15 | 22.1927342 |
| Min Ribo P value | 0.009893 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE83493 | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| GSE83493_alt | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| SRR5047771 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
| SRR7207252 | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
| SRR7207252_alt | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA370545 | 18 | TTG | - | 58285733-58285756, 58291634-58291665 |
SmProt