SmProt

Specific Information of Small Protein : SPROHSA200499

General Information

Small Protein ID	SPROHSA200499
Organism	Human (Homo sapiens)
Small Protein Sequence	MGKLSRCSSLRNLDLRSVCEVKKKENETYSRFKKEGTSSTIH*
RNA Sequence	ATGGGAAAATTAAGCAGATGCTCCAGTTTGAGAAACCTGGATCTGCGATCTGTTTGTGAGGTGAAGAAGAAAGAAAATGAAACATACTCAAGATTTAAGAAAGAGGGAACGAGCAGTACCATTCACTGA
Protein Length	42
Start Codon	ATG
Location	chr14:58288742-58291692:-
Blocks	58288742-58288813,58291634-58291692
Mean PhyloCSF	-8.1104883778
Data Source	Ribosome profiling; Literature;
Related Genes	ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000279636; AL132989.2; NONHSAG015097;NONHSAG015108;NONHSAG068810;
Mass (Da)	mono. 4844.5; avg. 4847.5

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE83493	ENSG00000257621.8	ENST00000555037.1	PSMA3-AS1	LncRNA	Novel	0.0096	None	267	396	14	13.0059745
GSE83493_alt	ENSG00000257621.8	ENST00000555037.1	PSMA3-AS1	LncRNA	Novel	0.0096	None	267	396	14	13.0059745

Min Ribo P value	0.0096
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE83493	HeLa S3	Cervical cancer	GSM2204389; GSM2204390; GSM2204391; GSM2204392	28460002;
GSE83493_alt	HeLa S3	Cervical cancer	GSM2204389; GSM2204390; GSM2204391; GSM2204392	28460002;

Database information

No results

Literature information

PMID	26687005;
Cell lines Or Tissues	BJ
Phenotype	NULL
Gene ID	ENSG00000257621
Transcript ID	ENST00000557660
Symbol	RP11-349A22.5
ORF Type	sORF
Gene Type	Antisense
Throughput	High-throughput Literature Mining
Interaction	NA
Function Description	NA

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA370544	33	TTG	-	58288742-58288813, 58291634-58291665