SmProt

Specific Information of Small Protein : SPROHSA19874

General Information

Small Protein ID	SPROHSA19874
Organism	Human (Homo sapiens)
Small Protein Sequence	KPALNFRANYNPHSVSGKEDSSTLDSGLERSQGLDSTGGGEDICRVCTAS*
RNA Sequence	AAGCCTGCTTTAAATTTCCGTGCCAATTACAACCCCCATTCTGTATCAGGCAAGGAAGACTCCTCTACCCTTGATTCTGGATTGGAAAGGTCACAAGGCTTAGATTCCACAGGAGGAGGTGAAGACATCTGCAGAGTCTGTACTGCGAGCTGA
Protein Length	50
Start Codon	AAG
Location	chr12:27696879-27703514:-
Blocks	27696879-27696978,27703460-27703514
Mean PhyloCSF	-2.82252943428
Data Source	Ribosome profiling;
Related Genes	ENSG00000256377; AC009509.1; ENSG00000174236; REP15; ENSG00000276261; AC009509.4; ENSG00000230519; HMGB1P49; NONHSAG010755;NONHSAG010756;NONHSAG064634;
Mass (Da)	mono. 5225.4; avg. 5228.6

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR4045276_alt	ENSG00000256377.6	ENST00000536922.6	AC009509.1	LncRNA	Novel	0.033159	None	198	351	7	10.8358651
SRR4045276_alt	ENSG00000256377.6	ENST00000656583.1	AC009509.1	LncRNA	Novel	0.033159	None	434	587	7	10.8358651
SRR4045276_alt	ENSG00000256377.6	ENST00000536317.5	AC009509.1	LncRNA	Novel	0.033159	None	465	618	7	10.8358651

Min Ribo P value	0.033159
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
SRR4045276_alt	Meg01 cells	WT	GSM2285909	27681415;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA136205	66	ATG	-	27696879-27696978, 27703460-27703562