Specific Information of Small Protein : SPROHSA136205
General Information
| Small Protein ID | SPROHSA136205 |
| Organism | human (Homo sapiens) |
| Small Protein Sequence | MKKLSSYITNLCCAPTKPALNFRANYNPHSVSGKEDSSTLDSGLERSQGLDSTGGGEDICRVCTAS* |
| RNA Sequence | ATGAAAAAACTATCCTCCTATATAACTAATCTGTGCTGTGCCCCAACAAAGCCTGCTTTAAATTTCCGTGCCAATTACAACCCCCATTCTGTATCAGGCAAGGAAGACTCCTCTACCCTTGATTCTGGATTGGAAAGGTCACAAGGCTTAGATTCCACAGGAGGAGGTGAAGACATCTGCAGAGTCTGTACTGCGAGCTGA |
| Protein Length | 66 |
| Start Codon | ATG |
| Location | chr12:27696879-27703562:- |
| Blocks | 27696879-27696978,27703460-27703562 |
| Mean PhyloCSF | -2.14849255445 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000256377; AC009509.1; ENSG00000174236; REP15; ENSG00000276261; AC009509.4; ENSG00000230519; HMGB1P49; NONHSAG010755;NONHSAG010756;NONHSAG064634; |
Ribosome profiling
| RiboID | GeneID | TransID | Symbol | GeneType | TISType | RiboPvalue | TISPvalue | StartOnTrans | StopOnTrans |
|---|
| SRR4045276 | ENSG00000256377.6 | ENST00000536922.6 | AC009509.1 | lncRNA | Novel | 0.034467 | None | 150 | 351 |
| SRR4045276 | ENSG00000256377.6 | ENST00000656583.1 | AC009509.1 | lncRNA | Novel | 0.034467 | None | 386 | 587 |
| SRR4045276 | ENSG00000256377.6 | ENST00000536317.5 | AC009509.1 | lncRNA | Novel | 0.034467 | None | 417 | 618 |
| Min Ribo Pvalue | 0.034467 |
| Min TIS Pvalue | None |
| RiboID | CellORTissue | Phenotype | RiboSource | PMID |
|---|
| SRR4045276 | Meg01 cells | WT | GSM2285909 | 27681415; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| VarID | Consequence To sORF | rsID | RiboID |
|---|
| No results |
Related Small Proteins with Different TISs
| ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA19874 | 50 | AAG | - | 27696879-27696978,27703460-27703514 |
References
| PMID | 27681415 |
| Title | Dynamic Regulation of a Ribosome Rescue Pathway in Erythroid Cells and Platelets |
| Journal | Cell Rep.2016 Sep 27;17(1):1-10.doi: 10.1016/j.celrep.2016.08.088. |
| Authors | Eric W Mills,Jamie Wangen,Rachel Green,Nicholas T Ingolia |