Specific Information of Small Protein : SPROHSA136205
General Information
| Small Protein ID | SPROHSA136205 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MKKLSSYITNLCCAPTKPALNFRANYNPHSVSGKEDSSTLDSGLERSQGLDSTGGGEDICRVCTAS* |
| RNA Sequence | ATGAAAAAACTATCCTCCTATATAACTAATCTGTGCTGTGCCCCAACAAAGCCTGCTTTAAATTTCCGTGCCAATTACAACCCCCATTCTGTATCAGGCAAGGAAGACTCCTCTACCCTTGATTCTGGATTGGAAAGGTCACAAGGCTTAGATTCCACAGGAGGAGGTGAAGACATCTGCAGAGTCTGTACTGCGAGCTGA |
| Protein Length | 66 |
| Start Codon | ATG |
| Location | chr12:27696879-27703562:- |
| Blocks | 27696879-27696978,27703460-27703562 |
| Mean PhyloCSF | -2.14849255445 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000256377; AC009509.1; ENSG00000174236; REP15; ENSG00000276261; AC009509.4; ENSG00000230519; HMGB1P49; NONHSAG010755;NONHSAG010756;NONHSAG064634; |
| Mass (Da) | mono. 6979.3; avg. 6983.7 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR4045276 | ENSG00000256377.6 | ENST00000536922.6 | AC009509.1 | LncRNA | Novel | 0.034467 | None | 150 | 351 | 7 | 8.24819583 |
| SRR4045276 | ENSG00000256377.6 | ENST00000656583.1 | AC009509.1 | LncRNA | Novel | 0.034467 | None | 386 | 587 | 7 | 8.24819583 |
| SRR4045276 | ENSG00000256377.6 | ENST00000536317.5 | AC009509.1 | LncRNA | Novel | 0.034467 | None | 417 | 618 | 7 | 8.24819583 |
| Min Ribo P value | 0.034467 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR4045276 | Meg01 cells | WT | GSM2285909 | 27681415; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA19874 | 50 | AAG | - | 27696879-27696978, 27703460-27703514 |
SmProt