Specific Information of Small Protein : SPROHSA136205
General Information
Small Protein IDSPROHSA136205
Organismhuman (Homo sapiens)
Small Protein SequenceMKKLSSYITNLCCAPTKPALNFRANYNPHSVSGKEDSSTLDSGLERSQGLDSTGGGEDICRVCTAS*
RNA SequenceATGAAAAAACTATCCTCCTATATAACTAATCTGTGCTGTGCCCCAACAAAGCCTGCTTTAAATTTCCGTGCCAATTACAACCCCCATTCTGTATCAGGCAAGGAAGACTCCTCTACCCTTGATTCTGGATTGGAAAGGTCACAAGGCTTAGATTCCACAGGAGGAGGTGAAGACATCTGCAGAGTCTGTACTGCGAGCTGA
Protein Length66
Start CodonATG
Locationchr12:27696879-27703562:-
Blocks27696879-27696978,27703460-27703562
Mean PhyloCSF-2.14849255445
Data SourceRibosome profiling;
Related GenesENSG00000256377; AC009509.1; ENSG00000174236; REP15; ENSG00000276261; AC009509.4; ENSG00000230519; HMGB1P49; NONHSAG010755;NONHSAG010756;NONHSAG064634;
Ribosome profiling
RiboIDGeneIDTransIDSymbolGeneTypeTISTypeRiboPvalueTISPvalueStartOnTransStopOnTrans
SRR4045276ENSG00000256377.6ENST00000536922.6AC009509.1lncRNANovel0.034467None150351
SRR4045276ENSG00000256377.6ENST00000656583.1AC009509.1lncRNANovel0.034467None386587
SRR4045276ENSG00000256377.6ENST00000536317.5AC009509.1lncRNANovel0.034467None417618
Min Ribo Pvalue0.034467
Min TIS PvalueNone
RiboIDCellORTissuePhenotypeRiboSourcePMID
SRR4045276Meg01 cellsWTGSM228590927681415;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
VarIDConsequence To sORFrsIDRiboID
No results
Related Small Proteins with Different TISs
IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA1987450AAG-27696879-27696978,27703460-27703514
References
PMID27681415
TitleDynamic Regulation of a Ribosome Rescue Pathway in Erythroid Cells and Platelets
JournalCell Rep.2016 Sep 27;17(1):1-10.doi: 10.1016/j.celrep.2016.08.088.
AuthorsEric W Mills,Jamie Wangen,Rachel Green,Nicholas T Ingolia