Specific Information of Small Protein : SPROHSA190162
General Information
| Small Protein ID | SPROHSA190162 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLIAIR* |
| RNA Sequence | ATGGATGTGTACCAGAAGGCGCTAGACCTGGACTCCAGCTGTAAGGAGGCGGCAGACGGCTACCAGCGCTGTATGATGGCGCAGTACAACCGGCACGACAGCCCCGAAGATGTGAAGCGACGAGCCATGGCCGACCCTGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCCTTATCCTGGAACAGATGCAGAAGGACCCCCAGGCACTCAGCGAACACTTAAAGAATCCTGTAATAGCACAGAAGATCCAGAAGCTGATGGATGTGGGTCTGATTGCAATTCGGTGA |
| Protein Length | 96 |
| Start Codon | ATG |
| Location | chr11:64203183-64204126:+ |
| Blocks | 64203183-64203228,64203449-64203622,64204053-64204126 |
| Mean PhyloCSF | 7.16950174644 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000168439; STIP1; |
| Mass (Da) | mono. 10996.4; avg. 11003.6 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE81802_alt | ENSG00000168439.16 | ENST00000538945.5 | STIP1 | Protein_coding | Truncated | 0.041992 | 0.044712 | 1327 | 1618 | NA | NA |
| GSE119615_1_alt | ENSG00000168439.16 | ENST00000538945.5 | STIP1 | Protein_coding | Truncated | 0.011839 | 0.038056 | 1327 | 1618 | 15 | 177.153630 |
| GSE81802_alt | ENSG00000168439.16 | ENST00000305218.8 | STIP1 | Protein_coding | Truncated | 0.041992 | 0.044712 | 1488 | 1779 | NA | NA |
| GSE119615_1_alt | ENSG00000168439.16 | ENST00000305218.8 | STIP1 | Protein_coding | Truncated | 0.011839 | 0.038056 | 1488 | 1779 | 15 | 177.153630 |
| GSE81802_alt | ENSG00000168439.16 | ENST00000358794.9 | STIP1 | Protein_coding | Truncated | 0.041992 | 0.022015 | 2035 | 2326 | NA | NA |
| GSE119615_1_alt | ENSG00000168439.16 | ENST00000358794.9 | STIP1 | Protein_coding | Truncated | 0.011839 | 0.038056 | 2035 | 2326 | 15 | 177.153630 |
| Min Ribo P value | 0.011839 |
| Min TIS P value | 0.022015 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE119615_1_alt | Non-differentiated SH-SY5Y cells | Neuroblastoma | GSM3378857; GSM3378858; GSM3378859; GSM3378860 | 31109297; |
| GSE81802_alt | CD19+ B cells | WT | GSM2175737 | 29529302; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 11-64203623-G-A | Synonymous p.98 | . | SRR5239056; SRR3680966; SRR3680967; SRR810103; SRR810104 |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA12366 | 14 | AAG | + | 64204081-64204126 |
SmProt