Specific Information of Small Protein : SPROHSA177005
General Information
| Small Protein ID | SPROHSA177005 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MLDKSTEAESLWDDIQKAWSDYLQEKSLPILSKVQEYSPDLLIQWSSNELLETCLRQRMHSEPQHT* |
| RNA Sequence | ATGCTGGATAAGTCGACGGAGGCAGAATCGCTTTGGGATGACATTCAGAAAGCCTGGAGTGATTACTTGCAAGAGAAAAGCCTACCTATTCTTTCCAAGGTGCAGGAATATTCCCCTGACCTGCTCATCCAGTGGTCCAGTAATGAATTACTGGAGACCTGCCTTAGACAAAGAATGCACTCGGAGCCCCAACACACCTAA |
| Protein Length | 66 |
| Start Codon | ATG |
| Location | chr12:97560599-97560898:+ |
| Blocks | 97560599-97560698,97560796-97560898 |
| Mean PhyloCSF | -5.99914927269 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000255794; RMST; ENSG00000278802; RF01969; ENSG00000276398; RF01970; NONHSAG064962; |
| Mass (Da) | mono. 7815.8; avg. 7820.7 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR5047770 | ENSG00000255794.8 | ENST00000661686.1 | RMST | LncRNA | Novel | 0.020292 | None | 1120 | 1321 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000661686.1 | RMST | LncRNA | Novel | 0.047829 | None | 1120 | 1321 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000670745.1 | RMST | LncRNA | Novel | 0.020292 | None | 1126 | 1327 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000670745.1 | RMST | LncRNA | Novel | 0.047829 | None | 1126 | 1327 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000666664.1 | RMST | LncRNA | Novel | 0.020292 | None | 1127 | 1328 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000666664.1 | RMST | LncRNA | Novel | 0.047829 | None | 1127 | 1328 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000654331.1 | RMST | LncRNA | Novel | 0.020292 | None | 1148 | 1349 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000654331.1 | RMST | LncRNA | Novel | 0.047829 | None | 1148 | 1349 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000670160.1 | RMST | LncRNA | Novel | 0.020292 | None | 1222 | 1423 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000670160.1 | RMST | LncRNA | Novel | 0.047829 | None | 1222 | 1423 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000664685.1 | RMST | LncRNA | Novel | 0.020292 | None | 1255 | 1456 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000664685.1 | RMST | LncRNA | Novel | 0.047829 | None | 1255 | 1456 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000639121.1 | RMST | LncRNA | Novel | 0.020292 | None | 1336 | 1537 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000639121.1 | RMST | LncRNA | Novel | 0.047829 | None | 1336 | 1537 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000660138.1 | RMST | LncRNA | Novel | 0.020292 | None | 1396 | 1597 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000660138.1 | RMST | LncRNA | Novel | 0.047829 | None | 1396 | 1597 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000663509.1 | RMST | LncRNA | Novel | 0.020292 | None | 1469 | 1670 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000663509.1 | RMST | LncRNA | Novel | 0.047829 | None | 1469 | 1670 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000640149.1 | RMST | LncRNA | Novel | 0.020292 | None | 1608 | 1809 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000640149.1 | RMST | LncRNA | Novel | 0.047829 | None | 1608 | 1809 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000665975.1 | RMST | LncRNA | Novel | 0.020292 | None | 1654 | 1855 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000665975.1 | RMST | LncRNA | Novel | 0.047829 | None | 1654 | 1855 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000663411.1 | RMST | LncRNA | Novel | 0.020292 | None | 1751 | 1952 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000663411.1 | RMST | LncRNA | Novel | 0.047829 | None | 1751 | 1952 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000538559.6 | RMST | LncRNA | Novel | 0.020292 | None | 1791 | 1992 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000538559.6 | RMST | LncRNA | Novel | 0.047829 | None | 1791 | 1992 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000639542.1 | RMST | LncRNA | Novel | 0.020292 | None | 2033 | 2234 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000639542.1 | RMST | LncRNA | Novel | 0.047829 | None | 2033 | 2234 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000658877.1 | RMST | LncRNA | Novel | 0.020292 | None | 2272 | 2473 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000658877.1 | RMST | LncRNA | Novel | 0.047829 | None | 2272 | 2473 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000663659.1 | RMST | LncRNA | Novel | 0.020292 | None | 496 | 697 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000663659.1 | RMST | LncRNA | Novel | 0.047829 | None | 496 | 697 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000656448.1 | RMST | LncRNA | Novel | 0.020292 | None | 825 | 1026 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000656448.1 | RMST | LncRNA | Novel | 0.047829 | None | 825 | 1026 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000662330.1 | RMST | LncRNA | Novel | 0.020292 | None | 833 | 1034 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000662330.1 | RMST | LncRNA | Novel | 0.047829 | None | 833 | 1034 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000548886.2 | RMST | LncRNA | Novel | 0.020292 | None | 841 | 1042 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000548886.2 | RMST | LncRNA | Novel | 0.047829 | None | 841 | 1042 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000662502.1 | RMST | LncRNA | Novel | 0.020292 | None | 951 | 1152 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000662502.1 | RMST | LncRNA | Novel | 0.047829 | None | 951 | 1152 | 9 | 7.91744060 |
| SRR5047770 | ENSG00000255794.8 | ENST00000664656.1 | RMST | LncRNA | Novel | 0.020292 | None | 967 | 1168 | 9 | 3.55254601 |
| SRR5047772 | ENSG00000255794.8 | ENST00000664656.1 | RMST | LncRNA | Novel | 0.047829 | None | 967 | 1168 | 9 | 7.91744060 |
| Min Ribo P value | 0.020292 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR5047770 | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
| SRR5047772 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA53815 | 61 | ACG | + | 97560614-97560698, 97560796-97560898 |
| SPROHSA150542 | 97 | ATG | + | 97530829-97530859, 97560536-97560698, 97560796-97560898 |
SmProt