SmProt
SmProt
| Small Protein ID | SPROHSA150542 | ||
| Organism | Human (Homo sapiens) | ||
| Small Protein Sequence | MRNCELVRPKEANNEGAGKEASATRVISQPQMLDKSTEAESLWDDIQKAWSDYLQEKSLPILSKVQEYSPDLLIQWSSNELLETCLRQRMHSEPQHT* | ||
| RNA Sequence | ATGAGAAATTGCGAACTTGTTCGGCCAAAGGAGGCTAATAATGAAGGGGCCGGGAAGGAGGCCAGTGCTACCAGGGTTATCTCACAACCTCAGATGCTGGATAAGTCGACGGAGGCAGAATCGCTTTGGGATGACATTCAGAAAGCCTGGAGTGATTACTTGCAAGAGAAAAGCCTACCTATTCTTTCCAAGGTGCAGGAATATTCCCCTGACCTGCTCATCCAGTGGTCCAGTAATGAATTACTGGAGACCTGCCTTAGACAAAGAATGCACTCGGAGCCCCAACACACCTAA | ||
| Protein Length | 97 | ||
| Start Codon | ATG | ||
| Location | chr12:97530829-97560898:+ | ||
| Blocks | 97530829-97530859,97560536-97560698,97560796-97560898 | ||
| Mean PhyloCSF | -4.79501022459 | ||
| Data Source | Ribosome profiling; | ||
| Related Genes | ENSG00000255794; RMST; ENSG00000275971; RF01967; ENSG00000274819; RF01968; ENSG00000251844; RF00537; ENSG00000278802; RF01969; ENSG00000276398; RF01970; NONHSAG064962;NONHSAG065643; | ||
| Mass (Da) | mono. 11180.5; avg. 11187.4 | ||
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR5047771 | ENSG00000255794.8 | ENST00000661686.1 | RMST | LncRNA | Novel | 0.044013 | None | 1027 | 1321 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000670745.1 | RMST | LncRNA | Novel | 0.044013 | None | 1033 | 1327 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000666664.1 | RMST | LncRNA | Novel | 0.044013 | None | 1034 | 1328 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000654331.1 | RMST | LncRNA | Novel | 0.044013 | None | 1055 | 1349 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000670160.1 | RMST | LncRNA | Novel | 0.044013 | None | 1129 | 1423 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000639121.1 | RMST | LncRNA | Novel | 0.044013 | None | 1243 | 1537 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000660138.1 | RMST | LncRNA | Novel | 0.044013 | None | 1303 | 1597 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000663509.1 | RMST | LncRNA | Novel | 0.044013 | None | 1376 | 1670 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000640149.1 | RMST | LncRNA | Novel | 0.044013 | None | 1515 | 1809 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000663411.1 | RMST | LncRNA | Novel | 0.044013 | None | 1658 | 1952 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000538559.6 | RMST | LncRNA | Novel | 0.044013 | None | 1698 | 1992 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000658877.1 | RMST | LncRNA | Novel | 0.044013 | None | 2179 | 2473 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000663659.1 | RMST | LncRNA | Novel | 0.044013 | None | 403 | 697 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000656448.1 | RMST | LncRNA | Novel | 0.044013 | None | 732 | 1026 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000662330.1 | RMST | LncRNA | Novel | 0.044013 | None | 740 | 1034 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000548886.2 | RMST | LncRNA | Novel | 0.044013 | None | 748 | 1042 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000662502.1 | RMST | LncRNA | Novel | 0.044013 | None | 858 | 1152 | 24 | 3.73324117 |
| SRR5047771 | ENSG00000255794.8 | ENST00000664656.1 | RMST | LncRNA | Novel | 0.044013 | None | 874 | 1168 | 24 | 3.73324117 |
| Min Ribo P value | 0.044013 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|---|---|---|---|
| SRR5047771 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
| No results |
| No results |
| No results |
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|---|---|---|---|---|---|---|---|---|---|
| No results | ||||||||||
| Disease | Detected | |
|---|---|---|
| No results | ||
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|---|---|---|
| No results | |||
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|---|---|---|---|
| SPROHSA53815 | 61 | ACG | + | 97560614-97560698, 97560796-97560898 |
| SPROHSA177005 | 66 | ATG | + | 97560599-97560698, 97560796-97560898 |