Specific Information of Small Protein : SPROHSA152824
General Information
Small Protein IDSPROHSA152824
OrganismHuman (Homo sapiens)
Small Protein SequenceMSLPQTPDLWVRPFNGQRLAEEGSPAFLGTERSRVVRG*
RNA SequenceATGAGCCTTCCGCAAACTCCTGACCTGTGGGTCCGTCCGTTCAACGGCCAAAGGCTGGCGGAGGAGGGATCCCCTGCCTTTCTCGGAACGGAACGGAGCAGAGTCGTGCGTGGTTGA
Protein Length38
Start CodonATG
Locationchr11:5596651-5596768:+
Blocks5596651-5596768
Mean PhyloCSF-7.2806153542
Data SourceRibosome profiling;
Related GenesENSG00000239920; AC104389.4; ENSG00000258588; TRIM6-TRIM34; ENSG00000121236; TRIM6; NONHSAG007512;
Mass (Da)mono. 4253.2; avg. 4255.8
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
SRR4045276ENSG00000121236.21ENST00000380097.8TRIM6Protein_coding5'UTR0.035132None15132510.1214124
GSE45833_6ENSG00000121236.21ENST00000380097.8TRIM6Protein_coding5'UTR0.035132None1513257.30226079
SRR4045276_altENSG00000121236.21ENST00000380097.8TRIM6Protein_coding5'UTR0.035132None15132510.1214124
GSE45833_6_altENSG00000121236.21ENST00000380097.8TRIM6Protein_coding5'UTR0.035132None1513257.30226079
GSE105082ENSG00000121236.21ENST00000380097.8TRIM6Protein_coding5'UTR0.040199None15132116.38891539
GSE105082_altENSG00000121236.21ENST00000380097.8TRIM6Protein_coding5'UTR0.040199None15132116.38891539
GSE58207_altENSG00000121236.21ENST00000380097.8TRIM6Protein_coding5'UTR0.0264110.012769151327162.4960910
Min Ribo P value0.026411
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE105082HELACervical cancerGSM2817679; GSM281768030591072;
GSE105082_altHELACervical cancerGSM2817679; GSM281768030591072;
GSE45833_6BJ cellsTransformedGSM104759123594524;
GSE45833_6_altBJ cellsTransformedGSM104759123594524;
GSE58207_altHCT116Colorectal carcinomaGSM1403307; GSM140330825510491;
SRR4045276Meg01 cellsWTGSM228590927681415;
SRR4045276_altMeg01 cellsWTGSM228590927681415;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
11-5596757-G-ANon-Synonymous p.V36Mrs12272467SRR7182550; SRR618773
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA29602720CTG+5596705-5596768